Lycium barbarum (goji berry): 132625152
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Entry
132625152 CDS
T09483
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132625152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132625152
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132625152
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132625152
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132625152
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
Torus
zf-CCCH_3
CCDC136_middle
Motif
Other DBs
NCBI-GeneID:
132625152
NCBI-ProteinID:
XP_060195946
LinkDB
All DBs
Position
12:complement(77336343..77345548)
Genome browser
AA seq
680 aa
AA seq
DB search
MDDGGEGGLSFDFEGGLDTVPTHPTASVPVIQPQDHHNNNNTNNPTPNNAYNAPVPNQGG
DGSFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQNLTSYGYSNRFFQN
RNTNYSTQADKSQTPQVHNVMNQAVKSTAAEPPIGQQHQPHQQQVQQPQHQGAPTQTQTL
PNNQQNQADRTAIPLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVE
NVILIFSVNRTRHFQGVAKMTSRVGGAAKGGNWKHEHGTAHYGRNFSVKWLKLCELSFQK
TRHLRNPYNENLPVKISRDCQELEISVGEQLASLLYLEPDSELMAISLAAESKREEERVK
GVNPDHGNENPDIVPFEDNEEEEEEESEEEEEEDENFGQAFGPAALGRGRGRGAVWPPIV
PFGRGARPFPGMRGFPPGMMNDGFSYGSMAPDGFPMPDPFGMGGRPFGPFGPRFSGDMMF
HGRPPAAGGFGMMMGPGRAPFMGGMGPGATGPPRGGRPMGMHPSFIPPPSQPSQNLRVKR
DQRTPVNERNDRFSSGPDQGRGQEMAGSVGGPDEGVRYPQTGNSFRNDDSESEDEAPRRS
RHGEKKKHSMDGDATTGTEK
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggtggagaaggaggattaagctttgactttgaagggggtttagacacagta
cccacacatccaactgcatctgtaccagtaatacaaccccaagaccaccacaacaacaac
aacaccaacaaccccaccccaaataatgcctataatgcccctgtccctaatcaaggaggg
gatggttcatttgttgggaatcgtagaagtttcaggcagactgtttgtaggcattggttg
cgttcattgtgtatgaagggtgatgcttgtggttttcttcatcagtatgataagtctagg
atgcctgtttgtaggttctttcgcctttacggcgagtgtcgtgagcaagattgtgtttat
aagcataccaatgaggatattaaagaatgtaacatgtataaattaggattttgtccgaat
ggtcctgattgccgatatcgacatgcaaagctgcctggacccccacctccagtggaagaa
gttcttcagaaaattcagaatttgacatcctatggttactcaaacaggtttttccaaaat
cggaatactaattattcaactcaggcagacaaatctcaaactccgcaagtacataatgta
atgaatcaagcagtgaaatctacagcagcagagccacccattggccaacagcaccagccg
catcaacagcaagttcaacagcctcaacatcagggtgccccaactcaaacacaaactctt
cccaacaaccagcaaaatcaggcggatagaactgcaatacccctgcctcaaggaacatct
aggtactttatagttaaaagctgcaaccgtgagaatcttgaattgtcagtacaacaagga
gtttgggcaactcaacgaagcaacgaggctaaactaaatgaagcttttgattctgtggaa
aatgtcattctaattttttcagtcaatcggactagacattttcagggtgttgcaaaaatg
acatctagagttggtggtgctgctaaaggaggaaattggaagcatgaacatggtactgca
cattatgggcggaatttttcggtaaaatggctaaagctttgtgaactgtccttccagaaa
actcgccatttgaggaatccatacaatgagaacttacctgtgaagataagcagagattgt
caagaattagagatctctgttggtgagcagttggcttctttgctctatctagaaccagac
agtgaacttatggcaatctcacttgctgcagaatccaagcgagaggaggaaagagtaaag
ggagtgaaccctgaccatgggaatgagaacccggatatcgtgccttttgaagacaatgaa
gaagaggaagaggaagaaagtgaggaggaggaggaggaggatgagaactttggtcaagct
tttggaccagctgctttgggcagaggaaggggtaggggagccgtatggcctcctatagtt
ccttttggacgtggagccaggccttttcctgggatgcggggcttccctccaggcatgatg
aatgatggattttcttatggatcaatggcacctgatggttttcctatgcctgatcctttt
ggaatgggcggccgaccttttggaccgtttggccctcgattctctggtgatatgatgttt
cacggccgtcctccagctgctggtggatttgggatgatgatgggtccaggaagggcccct
ttcatgggtggaatgggtcctggagcaactggcccacctagaggtggtcgaccaatggga
atgcatccatcatttattccacccccatcacagccctctcaaaatcttagggtcaaaagg
gaccagagaactccggttaatgaaaggaacgatagattcagttcagggccagatcaaggt
aggggtcaagagatggcaggctcagttggtggacctgatgaaggagtacgttatccacaa
actggaaacagctttagaaatgatgatagtgagagcgaggatgaagcacctagaaggtcc
agacatggtgagaaaaagaagcatagcatggatggagatgctacaactggcacagaaaag
taa
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integrated database retrieval system
