Lycium barbarum (goji berry): 132625933
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Entry
132625933 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132625933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132625933
03012 Translation factors [BR:
lbb03012
]
132625933
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132625933
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132625933
Translation factors [BR:
lbb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132625933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
NACHT
nSTAND3
Motif
Other DBs
NCBI-GeneID:
132625933
NCBI-ProteinID:
XP_060196568
LinkDB
All DBs
Position
2:complement(4628686..4639716)
Genome browser
AA seq
1027 aa
AA seq
DB search
MSVRLLNPHFLHFRNYSLLRSSTTSAQRSYSYSFSNRSAMSYRPNYRGGGGRRGGGGGGR
GGGRGGGRGEQRWWDPVWRAERLRQQAAEMEVMNENEWWGKMEQFKRGGEQEMVIRRNFS
RDDQQKLSDMAYQLELYFHAYNKGKALVASKVPLPSYRADLDERHGSTQKEIRMSTEIEE
RVGNLLSSSQDTVSAGTSSSTSGNSAKLSFKAVETAKPKLTIEDDTATKTLNMELKQKQE
KTRESEKVKGMISFREKLPAFKVKSEFMEAVASTQVLVVSGETGCGKTTQLPQFILEEEI
SSLRGAGCNIICTQPRRISAISVAARICSERGENLGDTVGYQIRLESKRSAQTRLLFCTT
GVLLRQLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINAE
LFSKYFRDAPTIHIPGLTYPVAELFLEDVLEKTRYLIKSEADNFQGNSRRRMRQQDSKRD
PLTDLFEDVDIGSHYKSYSMTTRQSLEAWSGSQLDLGLVEAAIEYICRREGEGAILVFLT
GWDDISKLLDKIKANNLLGDTRKFLILPLHGSMPTMNQREIFDRPPANMRKIVLATNIAE
SSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLY
PKLIHDAMPQYQLPEILRTPLQELCLHIKSLQFGAIESFLAKALQPPDALSVHNAIELLK
TIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRDPFVLPI
NRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRYGRERAFCWENFLSPVTLQMMEDM
RNQFVDLLSDIGFVDKSRGAKAYNEYSNDLEMVCAILCAGLYPNVVQCKRRGKRTAFYTK
EVGKVDIHPASVNAGVHLFPLPYLVYSEKVKTTSIFIRDSTNISDYSLLMFGGNLTPSKS
GEGIEMLGGYLHFSASKSVLDLIKKLRGELDKILKRKIEEPHFDVSVEGKGVVAAVVELL
HSQDIRY
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcggcttctaaacccccattttcttcacttccgtaactactctcttcttcgt
tcatcaacaacatcagctcaaaggagttacagttactctttctcaaaccgttccgctatg
tcttatcgtcccaattaccgaggcggcggtggccgacgtggcggcggcggaggaggacgt
ggcggtggacgtggaggaggacgtggtgaacagagatggtgggacccggtatggcgtgcc
gaacgccttcgccaacaggcagctgagatggaggtgatgaatgagaatgagtggtggggg
aagatggagcagtttaagagaggaggcgagcaggaaatggtaataaggcggaattttagt
agggatgaccagcagaagttgtctgatatggcgtatcaattagaactttacttccatgct
tataacaagggaaaggcacttgttgcaagcaaagtcccattgccaagctatcgtgctgat
cttgacgagcgtcatggatctacacagaaagagataaggatgtctacagagattgaggaa
agagtcggaaatctattgagtagttcacaagacacagtatctgctgggacatcctcttca
acatctggtaattctgccaaattatcattcaaagctgtagaaacagccaaacctaagttg
actatagaagatgatactgccaccaaaacacttaatatggaacttaaacagaagcaggaa
aagacgagggaaagtgaaaaagtcaagggaatgatctcattcagagaaaaacttccagca
tttaaagtaaaatctgaatttatggaagctgttgcaagtactcaggtattggtagtttct
ggagagactggttgtggaaagactacacagctccctcaattcattctagaagaggagata
tcatcccttcgcggtgctggctgtaacattatatgtactcagcctcgccgtatatcagca
atatcagttgccgctcgaatatgctctgaaagaggagagaatcttggtgatactgttgga
taccagatccggctggaatcaaagcgctctgctcaaacacggttgctattttgcacaaca
ggagtgttactgcggcaactggttcaggaccctgatttgactggtgttagccatctgctt
gttgatgaaatccatgaaagaggcatgaatgaagactttctcttgataattttacgtgac
ctccttcctcgacgacctgatttgcgtctcattctgatgagtgctactattaatgctgag
ttgttctctaaatacttcagagatgcacccacaattcatataccgggtttgacatatcca
gtggcggagctgttccttgaagacgtgttggagaagactcgttaccttataaaatcagaa
gcagacaatttccaaggaaactcaaggagaaggatgaggcaacaagattctaaaagagat
cctctgactgatctttttgaggatgtggacattggttcccattataaaagctacagcatg
actacaagacaatctctggaagcatggtctggttcacagcttgatttgggtctcgtggaa
gcagcaattgaatatatttgtcgccgtgaaggtgaaggtgcaattcttgtattcttaact
ggttgggatgacatttctaagctacttgataaaattaaggctaacaacctccttggggat
acgaggaagtttttaatcctccctcttcacggttcaatgccaacaatgaatcaacgagaa
atatttgatcgcccacctgctaacatgaggaaaattgttcttgcaaccaacatagctgag
agcagtataactatagatgatgtcgtgtatgtcatagactgtggaaaggcgaaagagact
agctatgatgcacttaacaagcttgcttgtttattaccatcatggatttcaaaggcctcg
gcacatcagagacgtggtcgtgcaggccgtgtacaacctggagtttgttataggttgtat
ccgaaactaatacatgatgctatgccacaatatcaactacctgagattcttcgaactcca
ttacaagagctttgtctccatattaagagcttgcagtttggcgccattgaatcctttttg
gccaaggcacttcaacctccagatgctctctctgtgcacaatgccattgaacttctgaaa
actattggagctctggatgatacagaagaacttactccgcttggccgccatctttgcact
ctaccactggatccaaatattggaaagatgcttctgatggggtccatcttccaatgtcta
aaccctgcactgactattgctgctgctctggcacaccgtgatccatttgtccttccaata
aacaggaaagaggaagcagatgctgctaaaagatccttcgctggtgattcttgcagtgat
catattgcacttcttaaagcatttgaaggatggaaagatgctaaacgctatggaagagaa
cgagccttctgttgggaaaatttcttatctcctgtaaccttgcagatgatggaagacatg
agaaatcagtttgttgacctactgtcagatattggttttgtggataaatcacgaggtgcc
aaggcatacaatgaatacagcaatgatttagagatggtatgcgccatcctttgtgccggc
ctctacccaaatgttgtgcagtgtaaaagaagaggaaagcgtacagcattttacactaag
gaagttggaaaagtcgatattcacccagcatctgttaatgctggtgttcatcttttccct
cttccctacctagtttacagtgagaaagtcaagactacaagcatttttatcagagattca
acgaacatatcagattattctcttcttatgtttgggggtaatctaactccaagcaaaagt
ggagagggcattgaaatgcttggaggctatctccacttttctgcatcaaaaagtgtgttg
gatttaataaagaaactgcgaggggaactggataaaatcttaaaaaggaaaatcgaagag
ccccactttgacgtctcggtcgagggaaagggtgtagttgcagctgtagttgagttactt
catagtcaagacatacgatactaa
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