Lycium barbarum (goji berry): 132625964
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Entry
132625964 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132625964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132625964
03012 Translation factors [BR:
lbb03012
]
132625964
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132625964
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132625964
Translation factors [BR:
lbb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132625964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
ABC_tran
T2SSE
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
132625964
NCBI-ProteinID:
XP_060196631
LinkDB
All DBs
Position
2:complement(5281944..5306957)
Genome browser
AA seq
1159 aa
AA seq
DB search
MHSRLGFLLACTKRSSSLLFSSQSNRNTLANYYNHRILINSDVNKVNFFEKSSFRLFGQQ
RGFCRYPVNAALEQFSDDEYECDYENHPASSSVANVDEWKWKLSLLLRNEKDQEIVSRDK
RDRRDYEQISNLAKRMGLHSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVVIPLSLQRRV
EGLLQEHIDRTQLSGGKADSILDGTESSDIVIDAKMDENPDSFLDGSVMEKVLQRRSLRM
RNMQRGWQESPDGNRMLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCGKTTQLPQYI
LESEIESGRGAFCSIICTQPRRISALAVAERVATERGEPLGDSVGYKVRLEGVKGKNTHL
LFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSA
TLNAELFSSYFGGAPMIHIPGFTYPVRANFLEDVLEITGYKLTSFNQVDDYGQDKMWKTQ
KQLAPRKKKNQITALVEDAVNKSNYEHYSARARDSLACWAPDCIGFNLIEAVLCHICRKE
RPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLVLTCHGSMATSEQKLIFEKPPQNVR
KIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGR
VQPGECYHLYPRCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSSALQPPEAL
AVQNAIQFLKMIGALDENENLTHLGKFLAILPVDPKLGKMLIMGAIFRCFDPVLTIVAGL
SVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLS
AQTLQAIHSLRKQFIFILKDAGLLDADTATNNKLSYNQSLVRAVICSGLYPGIASVVHRE
TSMSFKTMDDGQVFLYANSVNARYQTISYPWLVFGEKVKVNTVFIRDSTGVSDSIVILFG
SAVDCGDMAGHLKMLGGYIEFFMDPTLADCYIKLKEELEMLLQKKLQDPEVDIHKEGKYL
MLAVQELVSGDQCEGRFVFGRENKKPKDSKDTDRFTRDGTNPKSLLQTLLMRAGHSPPKY
KTKHLKTNEFRALAEFKGMQFVGKPKRNKTLAEKDAAIEALAWLTQTSEKNHDEDDKSPP
DVTDNMLKLLGKRRRSKRR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcattcaagattagggtttctattagcatgcacaaaaagaagttcttctctattattc
tcttcccaatcaaaccgcaacacattggcgaattactacaaccaccgaattttgattaac
agtgatgtaaataaggttaatttcttcgaaaaatcgagttttcgtttgtttggacagcag
cgtgggttttgtagataccctgttaatgctgctttagagcaattttcagatgatgagtat
gaatgtgactacgaaaatcatccggcttcgtcatcagtggccaatgtagatgagtggaaa
tggaaacttagcctgttgttgcgcaatgaaaaagatcaagaaattgtatccagagataaa
cgggatagaagagactatgagcagatatctaaccttgctaaaaggatgggtctccatagt
gaaatttatgggaaagttgtagtggtgagcaaggttcctcttccaaattacagacctgat
cttgatgataagcggcctcaaagagaggtagtaatcccactaagtttgcagaggagagta
gaaggcttgcttcaagagcatattgatagaacacaactcagcggtggaaaagctgacagc
attttagatggtactgagtcctctgatatagttatagatgcgaagatggatgaaaatcca
gattcattcttagatggctctgtcatggagaaggttcttcagaggcggagcttacgcatg
cgcaatatgcagaggggttggcaggaatctcctgatggcaacagaatgctagaattccgg
aaatctcttcctgcatttaaggaaaaggaaaggttgctccaagcaattgcacgtaatcag
gtggtagtaatttctggcgagacaggatgtggtaagaccactcaactgccacagtacatt
ctagagtcagaaatagaatctggtcgtggagcattttgtagcataatttgtacgcagcct
cgaagaatatctgctttggctgttgcagaaagagtggctacagaaaggggagaacctctt
ggtgactcagtgggttataaagtacgattagaaggggtgaaaggaaaaaatacacatttg
ctattttgcacgagtggtattttgcttcgtcgtcttctcagtgatcgcaatcttgatggg
ataacccatgttttcgttgatgagattcatgagcgaggcatgaatgaagatttcctgttg
attgtgttgaaggatcttcttccacgacgcccagatttgagattgattttgatgagtgct
actcttaatgctgaattattttccagttactttggaggggcacctatgattcacatacca
ggcttcacatatcctgtaagagcaaactttctggaagatgtgctggaaattacgggatat
aagttgacttcattcaaccaagttgatgattatggccaggacaagatgtggaaaacacaa
aaacagttagcaccccgcaaaaagaaaaatcagataactgcactcgttgaggatgctgta
aacaaatcaaactatgagcattatagtgcaagggcacgtgattcactagcatgctgggct
cctgattgtattggattcaatcttattgaggcagtcttgtgccatatatgtcggaaagaa
cgtccaggtgcggtattagtattcatgactggttgggaagatattagttgtttaagagat
caacttaaagctcatcctctcttgggtgatccaaatagagtgttggtgctcacttgtcat
ggttctatggctacctctgagcagaaactcatatttgagaagccacctcagaatgtacgt
aaaatagtacttgcaacaaatatggccgaggcaagtattactataaatgatgtagtcttt
gtagtggactgtggaaaagccaaggagacgacttatgatgcgctaaataataccccatgc
ttattaccctcatggatttcacaagcttctgctcgacaaagaaggggcagggctggccgt
gtccaaccaggcgagtgctaccacttgtatccacgatgtgtgtatgatgcttttgctgaa
tatcaactacctgaactcctgagaactcctttgaattctctttgcttgcaaataaagagt
ttacaggttggaagtattgctgaattcctatcatctgctcttcagccaccagaagcattg
gctgtgcaaaatgctattcagtttctgaagatgattggtgcattagatgaaaatgagaat
cttacacatctaggaaaattcttagcaatcctcccagtggatcccaagcttggaaaaatg
ctcattatgggcgctattttccgttgctttgatcctgttttgactatagtggctggtctt
agtgtacgggatccatttctgttgcctcaagataaaaaggatttagcggggacagcaaag
tccagattttcagccaaggactatagtgaccatatggctcttgtccgtgcatatgaagga
tggaaagatgctgaaagggaaggttctgcctatgaatattgctggaggaatttcctctct
gcccagactcttcaagctatccattctcttagaaagcaatttatcttcatcttgaaagat
gctggattgcttgatgctgatactgcaactaacaataaattaagttacaatcagtctttg
gttcgtgcagtcatatgttctggcttgtatcctggaattgcatcagtggtgcacagagaa
acatcaatgtccttcaagactatggatgatggacaagtctttctttatgcaaattcagtc
aatgctcgttatcaaacgatttcatacccttggctggtgttcggtgaaaaagtcaaggtc
aatacagtcttcatacgggattctactggagtatctgattcgattgtgatcctatttggt
agtgctgtagactgcggagatatggctgggcatttaaagatgttgggtgggtacatagag
ttcttcatggatcctactctggcggattgctacataaagctcaaagaggagctcgaaatg
cttttgcaaaagaagcttcaagatcctgaagtagacatccacaaggaaggcaaatacctt
atgcttgctgttcaggaactggtttcaggggatcagtgtgagggcaggtttgtgtttggt
cgtgaaaacaagaagcctaaagattctaaggacactgatagatttacaagggatgggaca
aacccaaagagcttgctgcagaccctacttatgagggcgggtcactcccctcccaagtac
aaaacaaagcatctaaaaacaaatgagtttagggcacttgcagagttcaagggaatgcaa
tttgttggtaaaccgaagagaaacaaaactcttgcagaaaaggatgctgcaatagaggca
ctagcatggttaactcaaacatctgaaaagaatcacgacgaagacgataaatctcctcct
gatgtcaccgataacatgctgaaacttcttggtaaacgcaggagatcaaagcgtcgttga
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integrated database retrieval system
