Lycium barbarum (goji berry): 132626279
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Entry
132626279 CDS
T09483
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lbb04131
]
132626279
04121 Ubiquitin system [BR:
lbb04121
]
132626279
Enzymes [BR:
lbb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132626279
Membrane trafficking [BR:
lbb04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
132626279
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
132626279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
Zn_ribbon_19
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
Prok-RING_1
zf-Nse
zf-ANAPC11
zf-RING_16
CxC4
UBZ_FAAP20
VPS18_RING_C
HypA
Motif
Other DBs
NCBI-GeneID:
132626279
NCBI-ProteinID:
XP_060197073
LinkDB
All DBs
Position
2:17834689..17837882
Genome browser
AA seq
315 aa
AA seq
DB search
MSSGSYTHWCHRCRQPIRPRGSNCLCPNCGGGFVEELDDVVGARSNNIEDDPHFGLMDPF
PDPRFGIMDALAAFMRQRMAGRNPNFDIRTRSGIVPGNGRGFGSGPWLIFHGQTPVSMTE
NDAFEYFFNGTPGGGMGQHRRPNFDDLMGPGLQQLIEQLSMNDRQGPAPAPRSAIDALPT
VKITQRHLNTDSQCPVCQDNFELGSDVKQMPCKHIYHSDCIIPWLVRHNSCPVCRLELPS
RASGSARTGNVSSGSNSSSRENSGQNQGRRNPFSFLWPFRSSNQNTGNYAERGGGSSSTA
PYEENNETNYPAWRF
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtggaagctatacacactggtgccacagatgcaggcagccaattcgtcctcga
gggtctaattgtctttgcccaaattgtggcggaggtttcgttgaagagctcgatgacgtg
gtaggtgctagatctaataatattgaggatgatcctcattttggattaatggatcctttc
ccggacccaagatttggtataatggatgcccttgctgcgttcatgaggcagagaatggca
ggaagaaatcctaattttgacattaggacaagatccggcattgttcccggaaacgggagg
ggttttggttctggtccatggttgatatttcatggccaaactcctgttagtatgacggaa
aatgatgcatttgagtacttcttcaatggaaccccgggaggaggaatggggcagcaccga
cgacctaatttcgatgatttgatggggcccgggctgcaacagttgattgagcagctcagt
atgaatgataggcaaggcccagctccggcacctcgttctgcaatagatgctttgcctact
gtcaagatcacacaaaggcacctcaacactgattctcaatgcccggtttgtcaagataac
tttgaattgggttctgacgtgaagcagatgccatgtaagcatatttaccattcagattgt
atcataccttggttggttcggcacaactcgtgccctgtttgccgtcttgagctgccttcc
cgagcttctgggagtgccagaactggaaacgttagcagtggaagcaacagtagtagcagg
gaaaacagcggtcagaaccagggaaggaggaatcctttttcatttttgtggccttttcgc
tcgtccaaccaaaacactggcaattatgctgagaggggaggaggaagtagctcaacagca
ccctatgaagagaacaacgaaacaaattaccctgcgtggcgcttttga
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