Lycium barbarum (goji berry): 132626503
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Entry
132626503 CDS
T09483
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like isoform X1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lbb04131
]
132626503
04121 Ubiquitin system [BR:
lbb04121
]
132626503
Enzymes [BR:
lbb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132626503
Membrane trafficking [BR:
lbb04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
132626503
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
132626503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_10
zf-RING_5
Zf_IFT144_1st
Nucleo_P87
Motif
Other DBs
NCBI-GeneID:
132626503
NCBI-ProteinID:
XP_060197396
LinkDB
All DBs
Position
2:52468311..52470857
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AA seq
378 aa
AA seq
DB search
MLCNFAKSACSFETRRKKIQIAEMEGRAATRYWCHHCSRRVNPVELKCPICQEGFIEEMG
SNNSALENESPLDFGGSDSDRALSLWAPILLGMMSSPRRRSRLRHLEFDDDDDDDDDDDD
HTREGDDPERRRRNSATILQLLQGIRAGMENAEGENRETGRESTRDREHVILINPFNQTI
IVQGSDNNNSRNQPIGSLGDYFIGPGLDMLLQHLAENDPNRYGTPPAQKEVVEALPEVTI
DETLQCSVCLEDFDIGTEAKEMPCKHKFHSGCILPWLELHSTCPVCRHQLPSDESKVESA
GSNGGSGNTNAQSSDGNGTRYENEDTRNENGRRFPLPWPLSGLFSSSNSGIQSSNANSSA
TTSSSSGNANSNAHMHED
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgcaattttgctaaatctgcttgcagctttgaaacaaggagaaagaagatccaa
atagctgaaatggagggaagagcagcaacaagatattggtgtcaccattgttcaaggagg
gtgaaccctgtggagttaaaatgtcccatttgtcaagaaggatttattgaagaaatggga
tcaaataatagtgctcttgaaaatgagagccctttagattttggagggtcagattctgat
cgtgccctctcactttgggcacctatcttgttaggcatgatgagtagccctcgtcgtcgt
tctagacttaggcatctcgaatttgatgatgatgatgatgatgatgacgacgacgatgat
catactcgtgaaggcgatgatcctgagcggaggaggaggaactctgccacaattctccag
ctcttgcaaggtattcgagctggaatggagaatgctgagggtgaaaacagggagacaggt
agagagagtactagggatcgcgagcatgtcatacttataaatccattcaatcaaaccatc
attgtgcagggttcggataataataattccaggaaccaacctattggctcattgggtgat
tatttcattggtcctggtttagacatgttactgcaacatttggctgagaatgatccaaat
aggtatggtacaccaccagctcaaaaggaggttgtagaggcgttgcctgaggtgacaatt
gatgagacgttgcagtgttctgtttgtttggaagactttgatattgggactgaagccaaa
gagatgccttgtaagcacaaatttcatagtggctgtatcttaccatggctggagcttcat
agcacatgtccagtctgtaggcatcagttgccctctgatgaatcaaaagttgagtctgct
ggatccaatggtggaagtggtaacacaaatgctcagagtagtgatggtaatggcacaagg
tatgaaaatgaggatactaggaatgaaaacgggcgaaggtttccccttccgtggcctttg
agtggcctgttttcatcctcaaactcaggtatccaatctagtaatgcaaattcatcagca
acgacgtcttcttcatcaggaaatgcaaactccaatgctcatatgcatgaggattaa
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