Lycium barbarum (goji berry): 132626589
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Entry
132626589 CDS
T09483
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132626589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132626589
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
132626589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
132626589
NCBI-ProteinID:
XP_060197490
LinkDB
All DBs
Position
2:84506900..84528708
Genome browser
AA seq
929 aa
AA seq
DB search
MEMASSEGISKNAEDTLRKVTSGPLPSTVAKLSGSSRGIPSDRDFHFYNNFSEFRTPISE
IDKKSKEILEKVGALSELWGNSISYLEDLDEEESGEWLMNINDDVLEKLASSLDEFRLLR
KKEEESGVKMEEEDFEGGGFQVVCRKKNRKVDNASVDKTEGKAEGVKVATKGKPKVPFHI
PTIPRPQDVYKIIVNNTNQPFEHVWLQRSDDGSRFVHPLEKFTPSDFVESAGIIEPAKPP
PLEITPFKLVEEVKDLKQLATKLRAVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVD
TLKLRVHIGPHLRDIFKDHRKKKVMHGADRDIVWLQRDFGIYVCNLFDTGQASRVLKLER
NSLEYLLQHFCGVTANKEYQNADWRLRPLLVEMMRYAREDTHYLLYIYDVMRMELLSSSA
DNGSPDAPLIEVYKRSYDICMQLYEKELLTDSSYQHIYGLQGAGFNAQQLAVVAGLHGWR
DVIARAEDESTGYVLPNKTLIEIAKQMPLTTNKLKRSMKSKHPYVERNLGAVVSIIRYSV
QNSAAYEAAVEHLKERRLELPAEENIVGTEGAEMLVEISESLKPTGTETSNVCSSPDAGV
FHVLASIQQQNESLKPESAVTQVGFSGPGDTSEHRNEYGDIKATSSGQVEVTIQAIKKPS
CGLGMLLGSTAKRKLHPDKKEPEEIQVQQIKSSVSLPFHAFSGRIEQIQQAATDPSKPLE
INHIGEPVATNSKLDVITLETDSDDGESVKGERSTREQENSFAMPVATSNLEDVMLLDDD
SDLEEPVKDDSEATNNQPECGETNNAVSVEEMDEGDENMALSNLSSFNKCFHSINQKSKA
KLAEKQQAHEGQLKVQPFDYEAARQQEVFGEDPGKQHLEREGDESRRSETGKKKDLVLGQ
PPIEGTAEFQQGRRRQAFPASGNRSYTFR
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggcttcatctgaaggtatatccaaaaacgccgaggatacgttacgcaaagtc
acaagtgggcctttgccatctacggttgcaaaactctctggttcttcaagaggaataccc
agcgatagagacttccatttctacaacaatttcagcgaattcagaacacccatatcagaa
atagacaagaaatccaaggaaatactggagaaagtaggggcattgtcggaattatgggga
aattccatatcgtatctggaggatctagatgaggaggagagcggagaatggctgatgaac
ataaatgacgacgttttggagaaactggcgtcgtcattggatgagtttaggctgttgaga
aagaaagaagaggagagtggagtgaagatggaggaggaggattttgaaggcggggggttt
caagtggtttgtcggaagaagaataggaaagtagacaatgcaagtgtggacaagactgaa
gggaaggcggagggggtgaaagtggctaccaaagggaagccaaaggttccgtttcatata
cccaccatccccaggccgcaagacgtgtataaaataattgttaacaatacaaaccagcca
tttgagcatgtttggttgcagagaagtgacgatggttccagatttgtgcatcctctggag
aagttcactccctcagattttgttgagagtgctggcatcattgagcctgccaaacctcct
ccattagagattactccattcaagcttgtggaagaggtcaaagatctgaagcagttagca
accaagttgcgtgctgtggatgagtttgcggttgatttggagcataatcaatatagatcg
tttcaaggattgacatgcttgatgcaaatatccactagaactgaagattttgttgttgac
actctgaagcttcgcgttcacattggcccacatctgagagatatttttaaggaccacagg
aagaaaaaggtgatgcatggtgctgatcgagatattgtgtggcttcaacgtgactttggc
atatatgtctgcaatttgttcgacactggccaggcctcaagggttttgaaactggaaaga
aacagtctggagtacctgctacaacatttttgtggagttacagcaaacaaagaatatcag
aatgcagattggagattacgcccacttcttgtagagatgatgagatatgctagagaagat
acacactatctcttgtacatttatgatgttatgaggatggaattgctatcttcatctgct
gacaatggatctcctgatgctcctctaatagaggtgtacaagcgcagttatgatatatgc
atgcagctgtatgaaaaagaacttttgactgatagctcatatcagcacatatatggatta
cagggagctggcttcaatgcgcagcagcttgcagttgttgctgggctacatgggtggagg
gatgttattgcccgagcagaagatgaaagtactggctatgttttgccaaacaaaacactt
attgaaattgctaagcagatgcctcttaccacaaacaaattaaagcgatcgatgaaatca
aagcatccgtatgttgagcgtaatcttggtgctgttgtcagcatcattaggtactctgtt
caaaattccgctgcatatgaagcagctgtggaacatctgaaggaaaggcgcttagaatta
ccagctgaagaaaacattgtgggtactgagggtgctgaaatgttagttgaaatttctgag
tcactgaaaccaacagggacagaaacttcaaatgtttgtagttcacctgatgctggtgtc
tttcacgtcctagcttcaatacagcaacaaaacgaatctctgaaaccagaaagcgctgtc
actcaagttggttttagtggacctggtgacacctctgaacatcgtaatgaatatggtgat
ataaaagctacttcttcgggacaggtggaagtaactattcaggcaattaagaagcccagc
tgtggtcttgggatgttactagggagtacagcaaagaggaagctgcatcctgataaaaaa
gagccggaagagatccaagtgcagcagatcaagtcttcggtgagccttccattccatgca
ttttcaggtaggattgagcagatacagcaagctgcaacagacccttctaaaccgttggaa
attaaccatataggggaacctgttgctactaattccaagttagacgttataaccctggag
actgattcagatgatggggaatcagtaaagggtgagcgatcaaccagagaacaggaaaac
tcctttgccatgccggtagctacttcaaatttggaagatgttatgttactggacgatgat
tcagatcttgaggaaccagtcaaagatgattcagaagctactaacaatcagcctgagtgt
ggggaaaccaataatgcagtttctgttgaggagatggatgaaggggatgagaatatggcc
ttgtctaatctctctagcttcaacaagtgtttccattcgataaatcaaaaaagtaaggca
aagcttgctgagaaacaacaagcacatgaaggtcagttgaaggttcagccttttgactat
gaagcagcaaggcagcaagaggtatttggagaagatccaggtaaacaacacctggaaaga
gaaggtgatgaatctcgtaggagtgagactggtaagaagaaggatttagtcttaggccag
ccaccgattgaagggacagcagagttccagcaaggtagaaggcgtcaagcttttccagct
tcggggaatcgaagctatactttccgttag
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