Lycium barbarum (goji berry): 132626612
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Entry
132626612 CDS
T09483
Name
(RefSeq) LOW QUALITY PROTEIN: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132626612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132626612
03016 Transfer RNA biogenesis [BR:
lbb03016
]
132626612
Enzymes [BR:
lbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
132626612
Messenger RNA biogenesis [BR:
lbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
132626612
Transfer RNA biogenesis [BR:
lbb03016
]
Prokaryotic type
tRNA degradation factors
132626612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
DUF6293_C
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
132626612
NCBI-ProteinID:
XP_060197517
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All DBs
Position
2:complement(87498021..87592343)
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AA seq
919 aa
AA seq
DB search
MLANPSFHGGPLHFIPTVRNKLCRSYACPILLHSRTLASSTLENRKNRRRRRSFTQFSIR
ASEEPQDVSVLAAALQASPFSVRIPVGDRHITVETGLIGRQASGAVTIRDGETIIYTTVC
LADVPSEPSDFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLK
GFYHETQVLSWVLSYDGLHPPDALAVTAAGIAMALSEVPNSEIVAGVRVGLIGEKFIVNP
TIQEMENSKLDLLLAGTRNAILMIEGYCDFLPEDKLLEAVEVGQDAVRGICKEVEALAQK
CGKPKMLDAIKLPPKELYKLVEEIAGSELVEVLQIKNKIPRRKVLSSLEEHVISILSEKG
YISTMEAFGSTETMPDLLEEDEDEEVVVDGEVDEGDVHIKPVARKTVPLLFSEVDVKLVF
KEVTSKFLRKRIVERGKRSDGRSPQEIRSIDARCGLLPRAHGSALFTRGETQSLAVVTLG
DKQMAQKIDNLVDEDEYKRFYLQYSFPPSCIGEVGRVGAPSRREIGHGMLAERALEPILP
PEDDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIAMGMVLDTKEFG
GDGTPLILSDILGSEDASGDMDFKVAGNDVGITAFQMDIKVGGITLPIMKQALLQAKDGR
KHILAEMSKCLPPPSRKLSKYAPLIHVMKVKPEKINLIIGSGGKKVKSIIEETGVEAIET
QDDGVVKITAKDLSSLEKSKSIISNLTMVPIVGDIYRNCEIKSIAPYGAFVEIAPGREGL
CHISELSANWLAKAEDAFKVGDRLDVKLIEINDKGQLRLSRRALLPDAEPEKQSTKARSA
SLQNDNVVSPRTPDKGKPKKAVTVSKDGSASENAEPLKEKXSSRKVSSPAADKPQPKKSG
GNISNKSGNAVVNGEAKVV
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccaaccctagcttccatggaggacctctccacttcataccaacagttcgcaac
aaactgtgcaggtcctacgcttgcccaatactactacatagcagaacccttgcttcctca
acactggaaaacaggaagaacagaagaagaagacgaagttttactcagttctccataaga
gcctcagaggagcctcaggacgtgtctgttttagctgcagcacttcaagcttcccccttc
tctgtccgaattcccgttggcgatagacatattacggttgagacaggtcttatagggagg
caggctagtggggctgttacaattagagatggagaaactattatctatactactgtttgt
ttagccgatgtcccaagtgagccttctgattttttcccgctttctgttcattatcaagaa
cgtttttctgcagctggtcggacgagtgggggattttttaaacgagaggggaggacaaaa
gatcatgaggttctcatttgtagattgatagataggcctttacgtccaaccatgctcaag
gggttctaccatgaaactcaagtactttcttgggtattaagttatgatggtttgcatcca
ccagatgccttggcagttacggctgctggaattgctatggctttgtcagaagtaccaaat
tcagaaattgtagcaggagttcgagttggtcttattggtgagaagttcatcgtgaatcca
actatacaggaaatggaaaactcgaaattggatttgttactagcaggcaccagaaatgca
atattgatgattgaggggtactgtgattttcttcccgaggacaagttgcttgaagctgta
gaagttgggcaggatgctgtgcggggtatctgcaaggaggtggaagctttggcgcagaaa
tgcggaaagccaaaaatgcttgacgccattaaattacctcccaaggagctgtataagcta
gtcgaagaaattgctggcagtgagttggtggaagttctacaaatcaaaaacaagattcca
agaagaaaggtgttatcatcattggaagaacatgtaataagcatattgtctgagaagggt
tatatcagtacaatggaagcttttgggtcaactgagacgatgccagatttgctagaggag
gacgaggatgaagaagtggtggttgatggtgaagttgatgagggtgatgttcacataaag
ccggttgcacgaaaaactgtcccattgctgttctctgaggtggatgtgaagctggtattc
aaggaagttacttccaaatttttgcggaaacggattgtggagagaggtaagagaagtgat
ggcaggagccctcaggagatacgatcgattgacgcacgctgtggactgcttcctagggca
catgggagtgctctcttcactcgaggtgaaacacagtcattggcggtggtaacacttggt
gataagcaaatggcacagaagatagacaaccttgtcgatgaagatgaatacaagagattt
tatcttcagtactcatttccaccctcgtgcattggtgaagttgggcgggtaggggcccca
tctagaagagaaattggtcatggaatgcttgcagagagagcactagaaccaatattgcct
cctgaagatgacttcccttacactgttcgtgttgagagtaccatcactgaaagcaatggc
tcatcgagtatggcgtctgtatgtggtgggtgcttagctttgcaagatgctggtgttcct
gttaagtgttctatcgcaggcatagcaatgggtatggttctggacacaaaggaatttggt
ggagatggaactccactcatcctttcagacatattgggttctgaagatgcatcaggagat
atggatttcaaggttgctggaaatgatgttggtattacggcatttcagatggacataaag
gtaggaggaattacgttgccaatcatgaaacaagctctcttacaagctaaagatggccga
aagcacattcttgctgagatgtcaaaatgcttgccacccccttcaagaaagttgtcaaag
tatgctccgctaatccatgttatgaaggttaaaccagaaaaaataaaccttatcattggc
tctggtggaaagaaggtgaagagcattattgaagaaactggtgttgaagctattgaaaca
caagatgatggcgtggtgaaaataactgccaaggatttgtcaagcctggaaaagtcaaaa
tccatcattagtaatctaacaatggttccaattgttggtgacatatataggaattgtgaa
attaaatctattgcaccttatggagcttttgtggagattgcgcctggacgagagggatta
tgccatatcagtgagctaagtgcaaattggctagccaaggctgaagatgccttcaaagtt
ggagaccgcctggatgtcaagctcatagagatcaatgacaaggggcaacttcgcttaagc
cgacgtgcattacttccagatgccgagcccgagaaacaaagtacaaaggcacgcagtgct
agccttcaaaatgacaatgtagtttcaccaagaactccagataagggtaaacctaagaaa
gctgtgactgtatcaaaggatggttcagcatcagagaatgcggaacctctcaaggagaaa
nacagttcccgaaaagtatcaagcccagccgcagacaagccccaaccaaaaaaaagtggc
ggcaacatctccaacaaaagtggaaatgcagtagtcaatggagaggcaaaagttgtataa
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