KEGG   Lycium barbarum (goji berry): 132626715
Entry
132626715         CDS       T09483                                 
Name
(RefSeq) phytochrome B isoform X1
  KO
K12121  phytochrome B
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    132626715
SSDB
Motif
Pfam: PHY PAS PAS_2 GAF HATPase_c HisKA PAS_9 PAS_4 PAS_8 PAS_3
Other DBs
NCBI-GeneID: 132626715
NCBI-ProteinID: XP_060197654
LinkDB
Position
2:107003802..107011859
AA seq 1129 aa
MASGSRTKHSQHNSSQVQAQSSGTSNVNYKDSISKAIAQYTADARLHAVFEQSGESGKSF
DYSQSVKTGTNSVVPEQQITAYLTKIQRGGHIQPFGCTIAVDEASFRVIAFSENACDMLS
LTPQSVPSLERPEILTIGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPFY
AILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVE
SVRELTGYDRVMVYKFHEDEHGEVVAESKRRDLEPYIGLHYPATDIPQASRFLFKQNRVR
MIVDCHATPVRVIQDDSLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDE
EGRNSMRLWGLVVGHHTSVRCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQ
TLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYLGKYYPLGVTPTEAQIKDIVEWLLT
YHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITTKDFLFWFRSHTAKEIKWGGAKH
HPEDKDDGQRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEASNSKA
VVHAQLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTGLSVE
EAMGKSLVHDLMHKESEETAEKLLFNALRGEEDKNVEIKLRTFGAEQPKKAVFVVVNACC
SKDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSE
WNTAMEKLTGWSRGEIVGKMLVGEIFGSCCRLKGPDAMTKFMIVLHNAIGGQDTDKFPFS
FFDRNGKYVQALLTANKRVNMEGHTIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKEL
AYICQEIKSPLNGIRFTNSLLEATDLTENQKQYLETSAACERQMSKIIKDVDLENIEDGS
LTLEKEEFFLGSVIDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVYGDQVRIQQVLADFL
LNMVRYAPSPDGWVEIQLRPSMKQISDGVTVVHIELRIVCPGEGLPPELVQDMFRSSRWV
TQEGLGLSMCGKILKLMNGEIQYIRESERCYFLIILDLPMTHQASKSVG
NT seq 3390 nt   +upstreamnt  +downstreamnt
atggcttctggaagtagaacaaagcattcccaacataactcatcacaagttcaagctcaa
tcttcaggtacaagtaatgtgaattataaagattcaataagcaaagccatagcacagtac
acagctgatgctagacttcatgctgtatttgaacaatctggtgagtctggaaagtctttt
gattactcacagtctgttaaaactggtacaaattctgttgtacctgaacagcaaattact
gcttatttgactaaaatacaaagagggggtcatattcaaccttttggttgtacgatagct
gtagatgaagctagttttcgggttatagctttcagtgaaaatgcctgtgatatgcttagt
ttaaccccacaatcagttccaagtcttgagaggcctgagatacttacaattggtactgat
gttaggaccctttttaccccttctagctctgttttgctagaaagagcatttggggcgcgc
gaaattacgttactgaatccgatttggattcattccaagaattctggcaagcccttttat
gctattttgcatagggttgatgttggcattgtcattgatttggagcctgctagaacggag
gaccccgctttatctattgctggagcggtgcagtcgcagaaacttgcggtgagggctatt
tctcacttgcaatcacttcctggtggggacattaagcttttgtgtgatactgtggttgag
agtgtcagggagttaaccgggtatgaccgggttatggtgtataaatttcatgaggatgag
catggggaggtagtggctgagagtaaaagacgagatttagagccctatattggtttgcat
tatcctgctactgacattcctcaagcttcacggtttttgtttaagcagaacagggtgaga
atgattgtggactgccatgcgacacctgtgcgggttattcaggatgactcactgatgcag
cctttgtgtttagttggttccacacttagagcccctcatggttgccacgcacagtacatg
gcaaacatggggtctattgcctcattaacactggcagttattattaatggaaatgatgag
gaaggccgaaattcaatgaggctatggggcttggttgttggacatcacacctctgttcgg
tgcattcctttccctcttcggtatgcgtgtgaattccttatgcaggcctttggactccaa
ttgaacatggagttgcaactggcatcacagttgtctgagaaacatgttttaaggacacaa
acactgttatgtgacatgctccttcgagactcacctacggggattgttacccaaagcccc
agtattatggaccttgtcaaatgcgatggtgctgctctatactacctggggaagtactat
ccattaggcgtcacaccgactgaagctcagataaaagacattgtggagtggttattgact
taccacggggactcaacaggtttaagtactgacagtttggctgatgctgggtatcctggg
gcagcttcacttggtgatgcagtttgtggtatggctgttgcttatataactactaaagat
ttcttgttttggtttcgctcccacacggcgaaagagataaagtggggtggtgcaaagcat
catcctgaagacaaggatgacggccagagaatgcatccacgctcttccttcaaggcattt
ttggaagttgttaaaagccgtagctcaccatgggaaaatgcagaaatggacgcaattcac
tctttgcagcttattctgcgagattcattcaaggatgctgaggcaagtaattctaaggct
gtcgtgcatgctcaacttggggaaatggagttgcaagggatagatgaactgagttctgtt
gccagagaaatggttagactgatagagactgcaacagctcccatatttgctgtcgatgtc
gaaggtcgcataaatgggtggaatgcaaaggttgctgaattgacaggcttatcagttgaa
gaagcaatggggaagtctttggttcatgatcttatgcacaaagaatcagaggagactgct
gagaaacttctgttcaatgctctaagaggcgaggaagataagaatgtagaaataaagtta
aggacatttggagccgagcaaccgaagaaagctgtttttgtggtggttaatgcttgctgt
agcaaagattacacaaacaacattgttggtgtttgctttgttgggcaggatgttactggg
caaaaagttgttatggacaagtttattcacatccaaggtgattacaaggctattgtgcac
agccccaatcctctgattcctcccatatttgcatcagatgagaacacttgttgctccgag
tggaacactgccatggaaaagctcactggttggtccagaggggagattgttgggaaaatg
ttagttggtgagatttttggaagttgttgtcggctcaagggcccagatgccatgacaaag
ttcatgattgtgttacataatgcaattggaggccaggatacagacaagtttccattttcc
ttttttgaccgaaatgggaaatatgtgcaagctcttttgactgcaaataagagagtcaat
atggagggccatactattggggctttctgtttcatacagatagccagtcctgaattgcag
caagctctaagagttcaaaggcaacaggaaaagaagtgttattctcagatgaaagagttg
gcgtacatttgtcaggaaataaaaagtcctcttaatggtatacgctttacaaattcattg
ttggaggccacagatttgacagaaaatcagaagcagtatctggagacaagtgcggcttgt
gagaggcagatgtctaagatcataaaggatgttgatctggaaaacattgaggacggttca
ctgacccttgagaaagaagaattttttcttgggagtgtaatagatgccgttgttagccaa
gtgatgttattactgagggaaaaaggcgtgcaattgatccgggatataccagaggagatt
aagacattaacagtatatggtgatcaagtgagaattcaacaggtcttggcagatttcttg
ctgaacatggtacggtatgcaccatcacctgacgggtgggtagagatccaacttcgacca
agtatgaagcagatatctgatggagtaactgttgtgcatattgaactcaggattgtatgc
cctggtgaagggcttcctccggaattggttcaagacatgttccgcagcagtcggtgggta
actcaggaaggcctagggctgagcatgtgcggaaaaatcttaaagcttatgaatggagag
atccagtatatcagagaatcagaaagatgttatttcctcattatccttgacctaccaatg
acccaccaagcttcaaagagtgttggctag

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