KEGG   Lycium barbarum (goji berry): 132627142
Entry
132627142         CDS       T09483                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03030  DNA replication
lbb03410  Base excision repair
lbb03420  Nucleotide excision repair
lbb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132627142
   03410 Base excision repair
    132627142
   03420 Nucleotide excision repair
    132627142
   03430 Mismatch repair
    132627142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lbb03032]
    132627142
   03036 Chromosome and associated proteins [BR:lbb03036]
    132627142
   03400 DNA repair and recombination proteins [BR:lbb03400]
    132627142
DNA replication proteins [BR:lbb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    132627142
  DNA Replication Termination Factors
   ELG1-RFC complex
    132627142
Chromosome and associated proteins [BR:lbb03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    132627142
DNA repair and recombination proteins [BR:lbb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     132627142
  Check point factors
   HRAD17(Rad24)-RFC complex
    132627142
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_11 Mg_chelatase AAA_16 AAA_assoc_2 nSTAND3 AAA_5 AAA_14 DUF3802 DEAD ResIII SLFN-g3_helicase AAA_24 AAA_2 PhoH AAA_18 AAA_28 AAA_19 AAA_7 DUF3853 AAA_30 NPHP3_N RNA_helicase DNAX_ATPase_lid AAA_25 Parvo_NS1 TIP49_C DUF815 IstB_IS21 TIP49 bpMoxR ATPase_2 NB-ARC
Other DBs
NCBI-GeneID: 132627142
NCBI-ProteinID: XP_060198283
LinkDB
Position
2:complement(127453053..127462110)
AA seq 339 aa
MAPLTQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSNRQSGYPCPPFKIIIL
DEADSMTQDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMGS
RILHICKEEGLNLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISAKDLISVSGVIP
NEVVQAIFSACRSGNFDLANKEVNNVIAEGYPVSQMLSQLYDIVVDADDISDEQKARICK
KFAEADKCLVDGADEYLQLLNVASTTMQALSNMPQDMVF
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccacttacgcaaagctctcaaccatgggtcgagaaatatcgaccgaaacaagtt
aaggacgtagctcaccaggatgaggtcgttcgagtcctcaccaacactctcgaaacctct
aactgcccgcatatgttgttttatggtccccctggaactggaaagacgacgactgctctt
gccattgcccatcaacttttcggacctgagctgtacaagtcgagggtattggagctaaat
gctagtgatgaccgtggtatcaatgtagttcgaacaaaaattaagaactttgctgctgtt
gctgtaggttctaataggcaaagtggttatccctgtccaccttttaagatcataatcctt
gatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgcactatggagaca
tattcaaaagttacaagattcttcttcatttgtaattacatcagcaggatcatagagcca
ctcgcttccagatgtgcaaagtttagattcaagccacttactgaagaaataatgggcagc
cgaatattgcatatttgtaaagaggaaggtcttaatctagattcagaggctctttctacc
ctcagttccatttctcaaggtgatctgcgaagggctataacatacttacaaagtgctgct
cggttatttggatcttccatatcagcaaaggacctaattagtgtgtctggggtcatccca
aatgaagttgttcaggccatattctcagcttgcagaagtggcaattttgacttggcaaac
aaagaagtgaacaatgtcattgctgaaggatatcctgtttctcagatgctgtctcagttg
tatgatatagtagttgatgcagacgacatttctgatgaacagaaagcaagaatatgcaag
aaatttgctgaagccgacaagtgtcttgttgatggagcagatgagtatttgcaacttttg
aatgttgcaagcaccacaatgcaagcgcttagcaacatgccgcaggacatggtattttga

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