Lycium barbarum (goji berry): 132627224
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Entry
132627224 CDS
T09483
Name
(RefSeq) small RNA degrading nuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132627224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lbb03009
]
132627224
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
RNases
132627224
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_T
bHLH_IRO3
Nmad5
E1_UFD
DUF5347
MAP1B_neuraxin
Motif
Other DBs
NCBI-GeneID:
132627224
NCBI-ProteinID:
XP_060198421
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All DBs
Position
2:complement(129829053..129855983)
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AA seq
566 aa
AA seq
DB search
MSSDNAKTEIPDEEKTTKPFFDVYGPQARADIVFNKPEANSTLNFQDVQGLITWVLADGF
MPSWAFIKNKPLIPKVVMLYVPGLDASLYLSQSKVLKGFKECCGVPRPVLALSCVSDGNQ
TIDALLTCKSKRKRKAAELISPKITQSSEQGAEAPNEETLSFVELKKDIPFPISYYTLTD
KELEENGYCYEKTEFLSTLPAPSGTPPHEVLALDCEMCITKEGFELTRVTLVDVKGQVML
DKLVKPSNDIVDYNTRYSGITCQMLEDVTTTLKDIQEEFLKMVHKETILVGHSLENDLLA
LKISHNLVIDTAVLYKHPRGTYKAALRVLSRKFLGREIQDSGNGHDSVEDAKATLELALL
KINNGPDFGIPPSQQLLRRKLLSVLSDSGKGSSIIDNISVVRRYGGELSHTIPVSSDDEA
LSKAIKEVRNDKVQFIWTQFAELYAYLRKQADDSEKLNKKLAEMIALLTCEKQSNNRKSI
KFDVTPELKDILSRMNRRVKSIYSNLPVNTMLIICTGHGDTAIVQRVRKILSEQTDASMS
REKIVKVLEELQAQAEVGLCFVGVKH
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgacaacgctaaaactgaaattcccgacgaagagaaaactaccaaacccttc
tttgacgtttacggccctcaggcaagagcagatattgttttcaacaaaccagaagccaac
tcaaccttaaacttccaagacgtgcaagggcttatcacctgggtgcttgctgatgggttc
atgccatcatgggcttttatcaaaaataagcctttgatccctaaagtggtaatgctgtat
gtccctggccttgatgcatctctatatctatcacaatctaaagtgctcaaaggtttcaaa
gaatgctgtggtgttccgaggccagttttagcgctcagttgtgtatcagatggaaatcag
acaatagatgcacttctcacgtgcaaatcaaagaggaaaaggaaagcagctgagctcatt
tctccgaaaatcacccagtcatctgaacaaggtgctgaggctcccaatgaggagactctg
tcttttgttgagctcaagaaagatataccatttccgattagttattacacacttacggat
aaggaactagaagaaaatggatactgttatgagaaaacagaatttctttcaacgctcccc
gctccttcaggaacacctccacatgaggttttggcccttgactgcgagatgtgtattaca
aaggaaggctttgagcttaccagagtgacattagtggatgttaaaggacaggttatgctg
gataaattggtcaaaccatcaaatgacattgttgactacaatactaggtatagtggaatt
acttgtcagatgttggaagatgtgactaccactcttaaagatatccaggaggagttcttg
aaaatggttcacaaggagaccattctagttgggcattccttggaaaatgatctgttagcc
ctgaagatcagtcataatttggtaattgataccgctgtgttgtacaagcacccaagagga
acctacaaagctgctcttcgcgttctgagcagaaagtttcttggcagggagatacaggac
tcaggcaatgggcatgatagcgttgaagatgcaaaagctacattggaactagcactacta
aaaataaacaatgggcctgattttggcatacctccatctcaacaattattgcggcggaag
cttctttcagttctgagtgactctggcaaaggatcctcaataattgataatatatccgta
gtgaggagatatggtggtgaattgtcccatacaattccagtatcatctgatgatgaagct
ctttcaaaagccattaaagaggtcagaaatgataaagttcagtttatctggacgcaattt
gcagagctatatgcatatttgaggaagcaagcagatgactctgagaagctaaataagaaa
ttagcggaaatgatagcattgctgacgtgtgagaaacagtctaataacagaaaaagcatc
aaatttgatgtcactcctgaactgaaggatatcttaagccgtatgaatcgcagagtcaag
agcatttactccaatcttcctgtaaatactatgcttattatttgcactggccatggagac
actgcaatagttcaaagagtgaggaagatcttgtcggagcagactgatgcctcgatgtcc
cgtgagaaaattgttaaagtcttggaagagttgcaggcgcaagctgaagttggtttgtgc
tttgtaggtgtcaaacactga
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