Lycium barbarum (goji berry): 132627470
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Entry
132627470 CDS
T09483
Name
(RefSeq) uncharacterized protein LOC132627470 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03013
Nucleocytoplasmic transport
lbb03015
mRNA surveillance pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132627470
09122 Translation
03013 Nucleocytoplasmic transport
132627470
03015 mRNA surveillance pathway
132627470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132627470
03041 Spliceosome [BR:
lbb03041
]
132627470
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132627470
Spliceosome [BR:
lbb03041
]
Complex C
Other components
EJC/TREX
132627470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
PCSK9_C3
Motif
Other DBs
NCBI-GeneID:
132627470
NCBI-ProteinID:
XP_060198812
LinkDB
All DBs
Position
2:136424210..136432865
Genome browser
AA seq
779 aa
AA seq
DB search
MSDYPVLGNLPINKWKVPELREELKRRNLMTKGLKDDLVRRLNDAIHKENGLEPAEPVKW
EPDPGIVEFIDDCLRMSERQVPGGFIRDKVLVDVATVGTDDASGGRKHSEASIGSTSVIN
EIASTDQFVEDKIDKKHEVIDSSQNNDVVDEVSGVRDVAIQGNSTGQDAEDMKISSSEGV
LEDNLRRQENDVEGTPLTSKEALENNSIKLENEGLKLSGMNAESDMSNPDTQVYEVNPDL
GSQVKSDSFSTDTLPINENKDLNDNLNADSVKLVTEVFRQEMELQSSSKDLSGVGSVHPL
DDQMPHEMLGLVGETNNEKSSEVKFSMKNSNADQVSVAVTKLEHGVESNTSSNSEQKDVQ
FEKARTLGDVVESSLSPKKLEASAENKHCVVASSDDGKVLSKISDVVDGENVEKINLDQS
SADDSMEEDVVETKHVDFDHISKENDKTEEPITGMTEEPKVLRNGSSSSMQQDNPSEKVE
SPQETKDRFPDLSEKRKFQDEVGGGSKEPAKRQRRWKTDSLRTAEPQNSSIALSENLVQT
TLVQPILGRTDSTVGEDAPKERLVPKSSKIATNSLKIENFLRPFTLKAVQELLARTGEVC
SFWMDHIKTHCYVTYSSVEEAIETRNAVYNLQWPPKGGRLLVADFVDPQQVQIKIDGREA
ASPATNPSPAVPPASSSLQALPPWQQGRKQQVESEHPLTRQPPPAPPLTRQPPPAPPTAP
PIKERLAPPVADKNDPPVITLDDLFRKTKAAPRIYYLPLTDEEVAKKLASRGDDKHESF
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattaccctgtgcttggtaatcttcccattaataaatggaaggtaccagaatta
agggaagagcttaagaggaggaacttaatgacaaaaggtttgaaggatgatcttgttagg
cgattaaatgacgctatccacaaagaaaatggtcttgaacctgctgaacctgttaaatgg
gaaccagaccctggtattgttgaatttattgatgattgtctgaggatgtccgaacgtcaa
gttcctgggggttttatacgtgacaaagtcttggttgatgttgcaactgtaggtactgat
gatgcttctggaggaagaaaacattcagaggcttctattggtagcactagtgttataaat
gagattgcgtctactgatcaatttgttgaagacaaaattgataagaaacacgaggttatt
gattcttctcagaataatgatgttgttgatgaggtatctggagttagggatgttgctatt
cagggaaatagcactggacaggacgctgaggatatgaaaatttcgtcttctgagggagtg
cttgaggacaaccttaggagacaagaaaatgatgtggagggaaccccactaacatccaag
gaagccttggaaaataatagcattaagttggagaatgagggtctgaaactctcaggcatg
aatgctgagtctgatatgtccaatccagacactcaggtatatgaggtcaaccctgattta
gggtctcaagtaaaatctgactcattttctactgatacattgcccattaatgaaaataaa
gatttaaatgataatttgaatgctgatagtgttaaattagtaactgaagtttttaggcaa
gagatggagctgcagtcatccagcaaagacctgtcaggtgttggtagcgttcatccattg
gatgatcagatgccacatgagatgctgggtcttgttggagaaactaacaatgagaaatct
tcagaggtgaaatttagcatgaaaaattccaatgcagatcaggtttctgttgctgttacc
aagctagagcatggtgtggaaagtaacacttcaagtaatagtgagcaaaaagatgtacag
tttgaaaaagctagaactttaggtgatgttgtagagtctagtttgtcacccaagaaactt
gaggcatctgctgaaaataaacattgtgttgttgcttccagcgatgatggaaaagttttg
agcaagatatctgatgtagtggatggtgagaatgtggaaaagataaacttggatcaatct
tcagctgatgattccatggaggaggatgtagtagagacaaagcatgtggattttgatcat
atttctaaggagaatgataagactgaagagcctattacaggaatgacagaagagcccaaa
gttctacgaaatggttcttctagttcaatgcagcaagacaatccttctgagaaggttgag
tctcctcaagaaactaaagataggtttcctgatttgtcagagaagagaaagtttcaagat
gaagtaggaggtgggagtaaagagcctgcaaaaaggcagcgcagatggaagactgacagt
ttgaggactgctgagccacaaaattcaagtattgcattatcagagaacttggttcagacc
acccttgtccagcctatccttggcaggactgactctacagttggtgaggatgcacccaag
gagcgccttgtaccaaaatcttccaaaatagccactaattctctcaaaattgagaacttc
ttgcggccttttacgctgaaagctgtgcaagagctccttgccagaactggtgaagtctgc
agtttctggatggaccacataaagacccattgttatgtcacgtattcttcggtagaggaa
gccatagagacccgaaatgctgtttacaacctccaatggccaccaaaaggaggtcgtctc
ctggttgcagattttgttgatccccagcaggtgcaaatcaagatagatggacgggaggct
gcttctccagcgacaaatcccagtcctgcagtgcctccagcttcatcctctcttcaagca
ctacctccttggcagcagggtcgcaaacagcaggttgagtcggaacatccactcactcgc
cagccaccacctgctcctccactcacacgccagccaccacctgctcctcctactgcgcca
ccaataaaagagaggctagctccacctgttgctgataaaaatgatcccccggttattact
ttggatgacctcttcagaaagaccaaagctgctccccgtatctattatttaccgctgaca
gatgaggaagttgctaaaaagcttgccagtagaggagatgataagcacgagagcttttag
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