Lycium barbarum (goji berry): 132627706
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Entry
132627706 CDS
T09483
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03022
Basal transcription factors
lbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132627706
09124 Replication and repair
03420 Nucleotide excision repair
132627706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132627706
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132627706
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132627706
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132627706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
Motif
Other DBs
NCBI-GeneID:
132627706
NCBI-ProteinID:
XP_060199248
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All DBs
Position
1:complement(473335..486264)
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AA seq
598 aa
AA seq
DB search
MADGKVVRRAKYKSSVKGPGVPGVLKLTKERFIFMPNDPTSTAKLNVEFKLIKGHKFSKE
GSSKQALLNLTQDQGGYIFEFDSFPDRDQCRDFVASAIAACMEAGKAASEKPVVPHDEQL
SATEMGRRIKLLQENSELQKLHRQLVIGGTLSETEFWAARKKLLEQSENKKPKQRVALKN
DMWSVKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLNFVPGKMSEKEFWTKYSRAE
YLHSTKNIVAAAAEAAEDEELAVFLKQDDMLASEARKKIRRVDPTLDMEADEGDDYMHLP
DHGLPQGETKEFLEPQYEPFKRSFSQYLNQHAAVVLRGRVIDVELGDTRSVAEAFTRTNQ
AELATEVSDENAYRERMNKVSRVAEIEDLQGPQDPPVALLSIKDPRDYFDSQQANAIKAL
GDADTGIRQLKFSVTKEDAFCYLKDSISEINSQGLIEPIISPEVALKVFNGLSQNISSTK
YHLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYTKVTRLKDAMS
QIYPKLQEIKESVQSDIRHQVSLLVQPMLQALDAAFAHYDADVQKRSAKSGERPNGFV
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgggaaggtggttaggcgtgctaagtacaaatcttcagttaagggccctggt
gtacctggcgttttgaaattgaccaaggaacggtttatctttatgccgaatgacccaaca
tcaacggcaaagcttaatgtggagttcaagttgattaaaggccacaagttttccaaggag
ggttcaagtaagcaggctctgcttaatcttacacaagatcagggtggatatatttttgag
tttgatagcttccctgaccgtgaccaatgtcgggactttgttgcctcagcaattgcggct
tgtatggaagctgggaaagctgcttctgaaaaacctgttgttcctcatgatgaacagctc
agtgcaacagaaatggggcgtcggattaagttactgcaggagaatagtgagttgcagaaa
ctccacaggcaattggtcattgggggtactctatcagagaccgaattttgggccgctagg
aagaagctgctggaacagagtgaaaacaagaaaccaaaacagcgggtagctttaaaaaat
gacatgtggagcgtaaaaccattatctgatggtcagacgaacagagttacatttaacttg
acaccagaggttattcatcagatttttgcagagaaaccagctgtccgccaagcatatttg
aactttgttcctggcaagatgtcagaaaaagaattctggactaaatattcaagagctgaa
tacctccacagtacaaaaaacattgttgcagctgctgccgaggctgctgaagatgaggag
cttgcagttttcttgaagcaagatgatatgttagcatctgaggctcggaagaagatcaga
agagtggatccaactctggacatggaagcagatgaaggtgatgattacatgcatctcccg
gatcatgggctacctcagggtgaaactaaggagtttctagaaccacagtatgaaccattc
aaaaggtctttctcgcaatacctcaatcagcatgcagcagtggttcttcgaggaagagtt
atagatgttgagctgggtgacacgagatctgttgctgaagcattcaccaggacaaatcag
gctgaactagctactgaagtgtctgatgagaatgcatatcgagaacgcatgaacaaagtt
tctcgagtggctgagattgaggatcttcagggacctcaagacccaccagttgcattgcta
agtatcaaggatcctcgagactactttgattctcagcaagcaaatgctataaaggctttg
ggagatgctgatacaggaataagacagctgaaatttagtgtgaccaaagaagatgccttt
tgctacttgaaggactccatctccgagataaattcccaaggattgattgaacctataatt
agtccagaagtagctcttaaggttttcaacgggcttagtcagaatatctcaagtacaaag
tatcatctgggaaagaatccccatgagagtgttttagatcagttgccaagtgcaactaaa
aatgaactattacttcattggacatcaattcaggaattattgaagcacttctggtcatct
tatccaataacgacaaaatatttctacaccaaggtgactaggttaaaggatgcaatgtct
cagatatatcccaagttgcaggagatcaaggaatctgtgcagtcagatatcagacatcaa
gtttcccttcttgtacagccaatgcttcaggctctagatgctgcctttgcccattacgat
gcagatgtacagaagagatctgccaaaagtggggagagaccaaatggatttgtttag
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