Lycium barbarum (goji berry): 132628280
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Entry
132628280 CDS
T09483
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132628280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132628280
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
132628280
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_8
TPR_17
TPR_14
TPR_12
TPR_9
TPR_19
CFAP70_TPR_C
TPR_6
TPR_15
CFAP70_mid_TPR
RMD1-3
UNC80_C
ANAPC3
TPR_NPHP3
TTC22_N
Y2_Tnp
TPR_10
Motif
Other DBs
NCBI-GeneID:
132628280
NCBI-ProteinID:
XP_060200059
LinkDB
All DBs
Position
2:153338690..153372344
Genome browser
AA seq
1231 aa
AA seq
DB search
MFFTHLVQLSQLIATLFQGSFLLELLYLRSDHWAIEFEKPGEKKRAGFLHKRILVIGSAL
KMSEEDDAIRRLEVAVVDDPSLHFDLGVLLWDKEEKEKAAQHFLIAAKLNPQNAAAFTYL
GHYYARVALDSHRAIKCYQRALALNPHDSTAGEAICDLLDATGKESLQIAVCREASDKSP
RAFWALCRLGYLLVNQNKWSEAVHSLQQAIRGYPTSPDLWEALGLSYQQLGMLTAAVKSY
GRAIELEESRVFALVESGNVYLMLGSFRKGIEQFRQALQISPLNLSAHHGLASALLSLAK
ESIDSGAVKWGASLLEEASKVALASTSIVGNISCAWKLLGDIQLTYAKCFPWMDEGLGSG
ADENSFSSSILSWKRICCLAVRSACCSYQRALHLSPWQANAYTDVAIASELLFTLKENCK
DDMNSWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFIRALQLDVSLAVAWAH
LGMLYRLEGESQLAQLAFDRARSIDPSLSLPWAGMSADAATRNLKPDEAYECCLRAVQIF
PLAEFQTGLVKLALQSGYLRSPEAFGAIQQALLRAPQYPESHNLKGLVCEARSDYESAVA
SYRLARLAARVFAGRFSKSYLADISTNLTRSLFMAGNAEDAIEECEYLESNGLLDVEGLQ
LYALSYWKLGKYDLALSMAKRLASSALPPEHPLAAASVTFVCRLVYHISGQELAITNVLQ
LPKRAFQSSKVRLVAAAIHALDESHQLDSVVSSVRESLSSSKEIAALDFVATLGLLVKHG
SKDCLEVQKGVNYLRRALHISPNSHLIRTLLGYLLVSSKEWKDVHISARCFIVDPSEHQE
KEGVKSSVEIFGAGAVACCTVGSGKKTLPMSICRENSTFGCKTIKLLQKCVHQEPWDHHS
YYLLVLNYFQKARQEKFPRNLCVVLERLISVALRSELYAKEDISSQYQKFQLLLCAAEVS
LQCGNNFKCIMHAKSALEMQLSDNYLFFAHLLLCRAYAVEDNYVGLHEEYVKCLQLKTDY
HIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAIYNLVQGLTAVWNGEFI
GAQESLVQACSLAGGESCLFLSHGAICMEIARQQSDSDFLSLAIRSLKKAKDSASMPLPF
VSVLLAQAEASLGSESKWEKNLIEEWSSWLPETRPAELFFQMHLLARRLTEGSAAISSLE
PSTSPLRWILQAIHMNPSCLRYWRALLKFME
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgtttttcacacacttggtgcaactcagccaacttattgccacactattccagggatca
tttttgctggaactactttacttgcggtcggaccattgggcaattgagtttgagaaaccg
ggggagaagaaaagggctggatttttgcataagagaatactagtaatcggaagcgccctc
aaaatgagtgaagaagacgatgctataagacggttagaagtagcagttgtggacgatcct
tcgctgcactttgatcttggggtgttgttatgggacaaggaggagaaagagaaagccgca
caacattttctcatagctgccaagctcaacccacaaaacgctgctgctttcacatatttg
ggacattactatgctcgagttgctctcgactctcacagggctatcaaatgttatcagaga
gccctcgcccttaatccccatgattccactgctggggaagcaatttgtgatttactggac
gcaactggaaaagagagcttgcagattgctgtatgccgtgaagcttcagacaagtccccc
agggcattctgggctttatgcagattgggttaccttctggtcaaccaaaacaagtggtcc
gaagcagtgcacagtcttcagcaggccatcagaggctatcccacatctcctgatttgtgg
gaggccctgggtctttcctaccagcaactgggcatgcttacagccgctgttaagtcctat
ggaagagctattgagttggaggaatcaagagtttttgcactggtggaaagtggaaatgtc
tatttgatgcttggttcgtttcgaaagggaatagagcagttccggcaagctttacaaatc
tcacctctgaatttgtccgcacatcatgggcttgcctctgcactccttagtttggcaaag
gaatctattgattctggtgctgttaaatggggagcttcactcttagaggaagcctcgaaa
gtggctcttgcaagtacttccattgttggcaatatatcttgtgcttggaagctgcttgga
gatattcagctcacatacgcaaaatgttttccatggatggatgaaggattgggctcagga
gctgacgaaaattcattcagtagctcgatcctgtcatggaagagaatctgctgtttagca
gtcagatctgcttgttgctcctaccagcgggctttgcatttgtccccttggcaagctaat
gcgtatactgatgttgccattgcatctgagcttcttttcacgttaaaggagaactgtaaa
gatgacatgaactcctggtttgtgtctgaaaagatgtgtcttggaggcttattacttgaa
ggttgcaatagcgagttttgggtagccttagggtgtttatctgatcattctgcattgaag
caacatgctttcatacgggcactgcagttggatgtttctcttgcggttgcatgggcacat
cttggaatgctttataggctggagggggaaagtcaattggctcagctagcatttgatcgt
gcaagaagtattgatccttcactttcattgccatgggcaggcatgtcggctgatgctgct
acaaggaatttgaaaccagacgaggcttatgagtgctgtctgcgggcggttcagatcttt
ccacttgcagagttccaaacaggtttagttaagcttgctctgcagtctggttatctgcga
tctccagaggcatttggagccatccagcaggctttgctgcgtgcacctcagtatcctgaa
tctcacaatctgaaagggctagtttgtgaggcacggagtgattatgaaagtgctgttgcc
tcatataggctagcacgccttgctgccagagtttttgcaggaagattttctaaatcatat
cttgcagatatatctaccaatttgaccaggtcgctttttatggcaggaaatgctgaggat
gctattgaagaatgtgaatatttggaaagcaatggtcttctggatgtagaaggtttgcag
ctttatgctctttcttattggaaacttggcaaatatgaccttgctctttcaatggcaaag
agactggcctcatctgctttaccaccagagcatccattggctgctgcctccgtcactttc
gtctgtagattagtatatcatatttcagggcaggaattagctattacaaatgttttgcaa
ttgccaaaaagagccttccagagttcaaaagttaggcttgtagcagctgctattcatgca
ttagatgaaagtcatcagcttgactcagttgtttcaagtgttcgtgagtctctttcatct
agcaaagagattgctgcattggatttcgtggccacactgggcttactagtcaaacatgga
tctaaagactgcctagaagttcagaagggagtcaattatctaagaagagctcttcatatt
tctccaaacagtcatttgataaggacccttcttggctatctattagtatccagcaaagaa
tggaaagatgttcacatttcagctcgatgcttcatagtggatccttctgaacatcaggaa
aaggaaggtgttaaatccagtgttgagatttttggtgctggagcagttgcttgctgtact
gtggggagcggcaagaagacattacccatgtccatctgtagagaaaattcaacattcggg
tgcaaaacaatcaagctgctgcagaagtgtgtccatcaggagccttgggaccatcattcc
tattacctgcttgtactaaactattttcagaaggcgcggcaggagaaatttccgcgtaac
ctgtgtgttgttcttgagaggttaataagtgtggctcttcgaagtgagctttatgcaaag
gaagacatatcttcccaataccaaaagttccagcttctgctttgtgctgcggaggttagt
ttgcaatgtgggaataatttcaagtgcattatgcatgcaaaaagcgctctagagatgcag
ctttcagataactacctcttctttgcacacttgctgctgtgtcgtgcctatgctgtggaa
gataattatgttgggcttcacgaagagtacgtaaagtgcttgcagctcaaaactgattat
catattggttggatttgtcttaagtttcttgaaagtcgatacaaactgcagtcagattcc
agttcactagccttggcctttcaagagtgtggcaaagaaataaaaacttcgtggaacatg
tggattgctatatataatttggttcaaggtctaactgcagtttggaatggggagtttatt
ggcgcacaagagtcccttgtgcaagcttgctcgttagcgggtggcgagagttgccttttt
cttagccatggtgctatttgcatggagattgccaggcaacagtccgattcagatttttta
tcacttgctattagaagtctgaagaaagcaaaagacagtgcttcgatgccgctacccttt
gtctcagtactactggcacaagcagaagctagcctcggctctgaatcaaagtgggaaaag
aacctcattgaggaatggtcatcttggctaccagagactaggcctgctgaactatttttc
cagatgcatttgcttgctagacgcctgacagaaggttctgcagctatatccagtctggag
ccttctacaagtcctctaagatggatacttcaagcaatccatatgaatccgtcttgtttg
agatattggagagctttgctgaaatttatggagtaa
DBGET
integrated database retrieval system
