Lycium barbarum (goji berry): 132629125
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Entry
132629125 CDS
T09483
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
132629125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132629125
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132629125
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
132629125
RNA polymerase I system
132629125
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
132629125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW5_SPT5
KOW
Spt5_N
KOW2_Spt5
KOW7_SPT5
KOW6_SPT5
PPV_E1_N
Motif
Other DBs
NCBI-GeneID:
132629125
NCBI-ProteinID:
XP_060200841
LinkDB
All DBs
Position
2:complement(147210510..147213646)
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AA seq
573 aa
AA seq
DB search
MVKFALELCERIKFARELCERFEEEIGSKRRAASHFFELEADVDSGEEGEDEEEEAEEGF
IDDDSNEIDNSVLQRRHVIHPQIGEDEDEFTRRIVERYGRKSRYEEEENATEVLEFQQAL
LPTIKDSKLWMVKCAIGHEREVGACLMQKQIDKSFKLQIKSVIALDHLQNYIYVEADKES
HVRDACKGMRNIFLKNKIVMVPNKEMSDVLTVKNRESEFSNDSWVRLKTGNYKGDLAQVV
NVDDIRRRVTVKLIPRIDFQALVNKIEGNLPLEKSKKFCPPPRYWSASKAKALEIPVKRQ
RDLVTGDYFDTVNGMKFKDGFLYKPVSIRSISNNVQPTPDDLEKFRGARDDDNDTENSIG
LPESVAIHSKDLIKIFELGDHVKVVSGSKEGEIGSITSVKGHVVTVLPDKSTNTLDVLAD
HIQKSSEVAYCTKDNNRSRNGVVTITNFRPPPLKKREGFGRVRRDPLLNARIKIRQGPYN
GMTGTVVEVRGNKTRVELEAQMNFVYVDRDQIYENVETENSSCMEERYGRGGETPMYCPR
TPLRPWMTPTRDSPATPIHERMRTPMRSRAWNP
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaatttgcccttgaactatgcgaaaggatcaaatttgcccgtgaactatgcgaa
aggttcgaagaagaaatcggtagtaaaagaagggcagcgtcacatttttttgagttagaa
gcagacgttgacagcggcgaggaaggagaagacgaagaagaagaagcagaagaaggtttc
attgacgatgattccaacgaaatagacaattctgtcctccaacgacgtcatgttattcat
ccacaaattggtgaagacgaagacgaatttacacgtagaattgtagaaagatacggaaga
aaatcgagatatgaagaagaggaaaatgcaacagaggttcttgaatttcagcaagcactt
ttgcctacaataaaagattctaagttatggatggttaagtgtgcaattggccatgagaga
gaagtaggtgcatgtttaatgcagaagcaaattgataaatcctttaaactgcaaattaaa
tcggtaattgcacttgatcatctccagaattacatatacgttgaagcagataaagaatct
catgttagggatgcatgtaaagggatgcgcaatattttcttgaaaaataagattgtaatg
gttccaaacaaggagatgtctgatgtgcttactgtgaaaaacagagaatcagaattttca
aatgattcttgggtgagattgaagactgggaattacaaaggagaccttgcacaagttgtg
aatgtggatgatattcgacgaagagttactgtgaaattgattccaagaattgattttcag
gctttggttaacaaaattgaaggtaatttaccgctggaaaagtcgaagaaattctgtcct
ccaccgagatattggagtgctagtaaagccaaggcattggaaattccagtgaagcgacag
agagatttagttactggggattactttgatacagttaatggcatgaaattcaaagatggt
tttttgtataaaccagtgtccattaggtcgatcagtaacaatgttcagccaactccggat
gatcttgagaaatttcgcggagctagagatgatgataatgatacagaaaatagcataggt
ttgcctgagagtgttgcaatccacagcaaagatttgatcaagatatttgaacttggagat
catgttaaagttgtttctggaagtaaggaaggtgaaattggttcaattacttcagttaaa
ggacatgtagtaactgtactgcccgacaaatctactaacacattggatgtgttggctgat
catatccagaaaagttctgaggttgcatattgtactaaagataacaacagaagtagaaat
ggggttgtaacaataaccaatttcagacctccacctcttaagaaacgagaaggatttgga
agagtaaggcgtgatccattattgaatgctcgaattaaaatccgtcaaggaccttataat
gggatgactgggacagttgtggaagttagagggaataaaacccgggtggaattggaggct
caaatgaattttgtttatgttgatcgcgatcaaatttatgagaacgtggaaacggagaat
tctagttgcatggaagaacgatatggccgagggggtgagactcctatgtactgtccaaga
actccacttcgtccatggatgactccaacaagagattctcctgcaacacctattcatgaa
agaatgagaacgccaatgcgaagtcgagcatggaatccttag
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