Lycium barbarum (goji berry): 132629985
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Entry
132629985 CDS
T09483
Name
(RefSeq) probable pectate lyase 12 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132629985
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
132629985
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
132629985
NCBI-ProteinID:
XP_060201446
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Position
3:complement(4705197..4711009)
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AA seq
494 aa
AA seq
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MQFVIVEKMLQRSYIVFFLLLSSFFPFAFGIFLNVTLPGQHPDPEAVALEVTRKVNVSLS
NLQTRRKLLSYYTNIDQSSCQTGNPIDDCWRCDHTWQLNRQRLADCAIGFGQYALGGKGG
RYYVVTSSSDPDPVNPPPGTLRYGVIQEEPLWIVFAANMEIKLSEELIFNSYKTLDGRGV
NVHITGGGCITLQYISHVIIHNIHVHHCYESGETNVRSSPTHFGYRGKSDGDGISIFSSK
DIWIDHCSLSHCKDGLIDVVMGSTGITISNNHFSHHNEVMLLGHSDDYLPDSGMQVTISF
NHFGKKLIQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGSPTINSQGNRYIAPFDPFAKEV
TKRVDTEEGHWRNWNWRSEGDVMANGAYFVASGEEVEVNYEKAYSVEPKSANFIDQLTLN
AGVLIHRSRGGNSGKWTATTNNDTESAGDDSGEDLVAISGDADDDYGGDESGSSSIYSNL
SLLVNSLVALLAFL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcgttattgtagaaaagatgctccagagaagctacattgtgttttttttgctt
ttaagttcattttttccctttgcttttgggattttcttgaatgtcactcttcctggtcag
catcctgatcctgaagctgttgctcttgaagttacaaggaaagtaaatgtatcactctca
aatctccagacaagaagaaaattgttgtcttactacaccaatattgatcaatcctcttgc
caaaccggcaacccaatcgatgattgttggcgatgtgaccatacttggcaattaaatcgc
caaagactagctgattgtgccattggttttggacaatatgcactaggtggcaaaggtggt
cgttactatgtcgtcacctcttcctcggaccccgaccctgtcaacccgccacctggcact
ctccgatatggtgtcatccaagaagaaccgttatggattgtcttcgcagcaaacatggag
attaaactctcagaggagctcattttcaactcgtacaaaaccctagacggtcgtggggtt
aacgtgcacatcacgggtggggggtgcataacgttacaatatatctcgcatgtcattatc
cacaatatccacgtccatcattgttacgaatcgggcgagacgaatgtacgttcgagccct
acacatttcggttatcggggaaaatcggacggggacgggatatcgatattcagttcgaag
gatatttggatcgaccattgttcattatcgcattgtaaagatggattgattgatgtagtg
atggggtcaacggggataacaatatcgaataatcatttttcacatcataatgaggtaatg
ttattgggacatagtgatgactatttacctgattcagggatgcaagtgacaatttcattt
aatcattttgggaagaaattaattcaaagaatgccaaggtgtaggagggggtatatacat
gtggtgaataatgattttacaaggtgggagatgtatgcaattggtggaagtggtagccct
actatcaatagccaaggaaatcgatatattgcaccctttgatccttttgctaaagaggtg
acaaaaagagtggacacagaagaaggacattggaggaattggaattggagaagtgaaggg
gatgtaatggcaaatggagcatactttgtggcctctggtgaagaagttgaggtcaattat
gaaaaagcttatagtgtggagcccaaatctgcaaatttcattgaccaacttaccctgaat
gctggtgtcctcattcacagaagcaggggaggcaacagtggaaagtggactgctaccacc
aacaatgacactgaatccgccggggacgacagcggagaagatctcgtggcaatttccggt
gacgctgacgacgactacggtggtgatgagtctggaagctcttcaatctactctaattta
tccttgttagttaattctctagtggcattgttagccttcttgtag
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