Lycium barbarum (goji berry): 132630021
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Entry
132630021 CDS
T09483
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132630021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132630021
03009 Ribosome biogenesis [BR:
lbb03009
]
132630021
04131 Membrane trafficking [BR:
lbb04131
]
132630021
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lbb04147
]
132630021
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
132630021
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
132630021
Membrane trafficking [BR:
lbb04131
]
SNARE
SNARE associated proteins
Others
132630021
Autophagy
Aggrephagy
Other aggrephagy associated proteins
132630021
Exosome [BR:
lbb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
132630021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
Mg_chelatase
AAA_28
nSTAND3
AAA_17
Parvo_NS1
AAA_18
ATPase_2
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
NB-ARC
TsaE
AAA_24
Vps4_C
NACHT
DUF815
Zeta_toxin
AAA_lid_PRS2_C
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
132630021
NCBI-ProteinID:
XP_060201499
LinkDB
All DBs
Position
3:5483175..5488705
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AA seq
807 aa
AA seq
DB search
MTNEAESSDLKGTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFIVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVNREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIARDTHGHVGADLAALCT
EAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFSTALGTSNPSALRETVVEVPNVSW
EDIGGLETVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGGSSGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN
PEAMEEDVDDEVSEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
AGTGHTTGTADPFATSAGAADEDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgaagctgaatcatctgatttgaaagggactaagagggattttagtacagcg
attcttgagagaaagaagtcacctaatcgacttgttgttgatgaagcaatcaatgatgat
aactctgttgtttctcttcaccctgatactatggaaaagcttcagcttttccgtggtgac
acaatcttgataaagggaaagaaacgaaaagatacaatctgcattgctcttgctgatgac
acctgcgaggagccaaagattaggatgaacaaggttgttagaaataaccttagagttcgt
cttggtgatgttgtgtctgtgcatcaatgtcctgatgtcaagtacgggaaacgtgtgcac
attcttcccattgatgacaccattgaaggggttactggaaatctatttgacgcttacttg
aaaccctatttccttgaagcatatcgaccagtgagaaagggcgatttatttattgtaaga
ggaggaatgagaagtgtagagttcaaggttatcgagactgatcctcctgaatattgtgtt
gttgccccagataccgagatattttgcgagggtgaacctgtgaacagagaagatgagaat
cggctagatgaggttggttatgatgatgttggtggcgttcgtaaacaaatggctcagatc
cgcgagcttgttgagcttccgttgaggcatccacaactcttcaaatctattggtgtgaaa
cctcccaaaggaattcttctgtatggacctcctggatcgggtaaaacattgatagctcga
gcagttgctaatgagactggcgcgttcttcttttgcattaatgggccagagatcatgtcc
aaattggctggagaaagtgaaagcaatctcaggaaagcattcgaggaagccgagaagaat
gcaccttcgatcatctttattgatgaaattgactcaatagctcctaaacgtgagaagaca
catggagaggttgagaggaggattgtttctcagcttttgactctcatggatggtctcaaa
tcacgtgctcacgtaattgtcatgggtgccactaatcgccctaatagtattgaccccgcc
ctaagaaggtttggcagatttgatagggaaatagatatcggtgtgcctgatgaagtcggg
cgccttgaggtgcttcgtatccatacaaagaacatgaagctcgccgaagatgtagatttg
gaaagaattgctagagacacacatggtcatgttggtgcggatttggcagctttgtgtacc
gaggctgcacttcagtgcatcagagagaagatggacgtgattgacttggaagatgaatct
atcgatgccgagatattgaactccatggccgtgactaatgagcacttctcaactgccctt
gggacaagcaatccatctgccttgcgtgaaactgttgttgaagttcctaatgtctcctgg
gaggacattggaggccttgagactgtcaagcgtgagctccaagagactgttcaatatcca
gtggaacatcctgagaagttcgagaagtttggtatgtctccctcaaagggtgttctcttc
tatgggccacctggatgtgggaaaactttactggcgaaggctattgctaatgaatgtcag
gccaactttattagtgtcaagggtccagaattgcttactatgtggttcggagagagtgaa
gccaacgttagagaaatattcgacaaggctcgagggtctgctccatgtgtcctgtttttt
gacgagttggactcgattgctactcagagaggaggtagcagtggagatgccggaggagcg
gctgatagagttttgaatcaactcctcactgaaatggatgggatgaatgccaagaaaact
gttttcattattggtgccaccaacaggcccgacattattgatcctgcacttctgaggccc
ggtcgtcttgaccaattgatctacattcctctacctgacgaggactctcgccatcaaatt
ttcaaggcatgcctgcggaaatcacccctttctaaggatatagatctcagagctcttgca
aaatatacgcaagggttcagcggagctgacattacggagatctgccaacgtgcatgcaaa
tatgctatccgagagaacattgagaaagatattgagagggagaggaggagaagagataat
ccggaagccatggaggaagacgttgatgatgaggtatctgagatcaagcctgctcacttt
gaggaatcaatgaaatatgctaggagaagtgtcagcgatgctgatatccgcaagtaccaa
gcttttgctcaaacgttgcagcagtcccgaggttttggttctgagttccggttcgcagag
gctggcacgggtcacaccaccggaactgctgatccgtttgcaacttctgctggtgctgca
gatgaagatgacctatatagctag
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