Lycium barbarum (goji berry): 132630652
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Entry
132630652 CDS
T09483
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132630652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lbb03009
]
132630652
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
132630652
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
EIF3I
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
Utp13
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_Aladin
ANAPC4_WD40
WD_LRWD1
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_Nup120_160
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_WDR19_1st
PEP5_VPS11_N
Beta-prop_ACSF4
Beta-prop_Vps41
Beta-prop_NWD2_C
SGL
Beta-prop_RSE1_2nd
PROPPIN
Cytochrom_D1
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Polysacc_lyase-like
Motif
Other DBs
NCBI-GeneID:
132630652
NCBI-ProteinID:
XP_060202192
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Position
3:19326483..19336810
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AA seq
891 aa
AA seq
DB search
MELKKIELKKSYKSVKSLEQFYTGGPYVVASDGSFMVCACNETLKLVDLSSSMITSTIEG
DSEPVTALALNPDSNNILFSASHSRLIRVWDLSTLKCLRSWKGHEGPVMGMACDASGGLL
ATSGADGKVRVWDVDGGFCTHQFQGHKGVVATIVFHPHPDRLQLFSGGDDGSVRVWDLTQ
KTKKKCLAKLEKHQSTVTSMAISDDGWTLITAGRDKVVNLCNLHDYSCLTTIPTLESVET
VCIIGSESPFAACLASSKHPQAKKRSDVPSINFITVGERGLVRIWSSDRALCLFEQKNSD
ITISSDNEDSKRGFISALILPASQELLCVTADQQFFLYYPEESEGSMNLFLRKRFVGYNE
EIADMKFLGDDEQFLAVATSVEQVRVYDLESMSCSYVLSGHTDVILCLDTCVSSSGRTLI
VTGSKDNNVRLWDCENKACVGVGIGHMGAVGAVTFSKKQRNFFVSGSSDRTLKVWNMDSV
SGNNEEIITLKAKAVVAAHDKDINSLAVAPTDSLVCSGSQDRTACIWRLPDLVSVVTLKG
HKRGIWSVEFSPVDPCVITASGDKTIKIWAISDGSCLTTFEGHTSSVLRASFLTRGTQFV
SCGAGGLVKLWTVRTNECIATYDQHEDKIWALAIGKKTEMLATGGGDAVINLWHDSTALD
KEEAFRKEEECVLRSQELKNALIDADYNRAIQIALELRRPHDLLDIFGEINRERDAGDLI
GKALEALSKEKFCLLWEYVREWNTKPKIYHIAQFILSQLFKILATGTVKIKVGEELLEGV
SAYTRRHFNRLDRLERESFILDYILASMSVIEPEGNEEKFENKDATLSTAADSEQLSEIA
PTEQDQHHEDIKEKKSSKKRKLHISTDVAGKKVKGLSDRAKCLTHCTSSLK
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaagaagatagaattgaagaagagttacaagagtgtgaagtctcttgagcaa
ttctacactggagggccttatgtggttgcctcggatggttcgtttatggtatgtgcgtgt
aatgagacacttaagctggtggatttatcctcttcgatgataacatctacaatagaaggc
gattctgaaccagtgacagcacttgctcttaaccctgatagtaataatattctgttttct
gctagccatagtcgcctaattagagtttgggacctttccaccctcaaatgcctacgctcc
tggaaggggcatgaaggacctgtaatggggatggcttgtgatgcatcaggtggattgctg
gcaacatcaggggctgacgggaaagttcgcgtatgggatgtggatgggggattctgcact
catcagttccaaggtcataaaggggttgtcgccaccattgtgtttcatcctcacccggac
cgcctgcagttgttctccggtggtgatgacggttcagtaagggtctgggatctgacacaa
aagacaaaaaagaaatgcctggcaaaactagagaaacatcaatcaaccgtcacttccatg
gcaatatccgacgatggatggactttgatcactgcagggagagacaaggttgtgaatttg
tgtaacttgcatgactacagctgcctgaccacaataccaacacttgaatcagttgaaacc
gtttgtataattggttcagagtctccttttgctgcatgcctagcttcatcaaaacatccg
caggcaaagaagagaagtgatgtaccatcaattaatttcatcactgttggtgagcgtgga
ttggtgcggatatggagttctgatagggcactgtgcctctttgagcagaagaactccgat
atcaccataagctctgacaatgaagattcaaagaggggctttatttctgctttgattttg
cctgcaagtcaagagttgctctgtgttacagcagaccagcagttttttctctactatccg
gaggaatctgaaggtagtatgaatctatttcttaggaagaggtttgttggatacaatgaa
gagattgcagatatgaagtttttgggtgacgatgaacagttccttgccgtcgcaacaagt
gtagagcaggtacgggtgtacgatcttgaatcaatgtcgtgctcttatgtattgtctggg
cacactgatgttattttgtgtcttgatacctgtgtatcaagttctggaagaacacttata
gtaacggggagcaaggacaacaatgttaggttatgggattgcgagaacaaggcttgtgtt
ggcgtaggcataggtcacatgggagctgttggtgctgttactttttcaaagaagcaacgg
aacttcttcgtgagtggtagtagtgaccgtactctgaaggtatggaatatggacagtgtc
tctggcaacaatgaagaaattataactctgaaagcaaaagcagttgtagcagcacatgac
aaggatattaactctttggcagtagcaccaactgacagtcttgtttgcagtggttcccag
gatcgcactgcctgcatatggagacttccagacctagtgtcagtggttacactgaaaggg
cataaaagggggatatggtctgtggagttttctccagttgatccatgcgtgataacagct
tctggagataagacgataaagatatgggccatatctgatggatcatgtcttacaacattt
gaagggcatacatcaagtgtgttaagagcatcgtttcttacccgtggaacacagtttgtt
tcttgtggtgctggtggtttggtgaagttgtggacagttaggaccaatgagtgtatcgca
acatatgaccaacatgaggataagatatgggcccttgctattggtaagaaaacagaaatg
cttgcaactggcggtggtgatgcggtgatcaatctgtggcatgactcaacagctttagat
aaagaggaagcttttcgtaaagaagaggaatgcgttctacggagtcaagagttaaaaaat
gctctaatagatgctgactacaacagagccatccagatagcattggagcttcgaagaccg
catgaccttctagatatatttggtgaaatcaacagggagagagatgctggagatctgata
ggaaaagcacttgaggctctttctaaagaaaagttctgtttgctttgggaatatgtcagg
gaatggaacacgaagccaaagatatatcatattgcacagtttattctttcccaattgttc
aagattcttgctactgggactgttaagataaaggtcggtgaagaactgcttgaaggtgtt
agtgcttatactcggagacatttcaatagactagatagattagaaagggaaagtttcatt
ctggactacattttagctagtatgtcggtcattgagccagaagggaatgaggaaaaattt
gagaacaaggatgccacactttctactgctgcagatagcgagcagttaagtgagattgct
ccaacggagcaagatcaacaccatgaagatataaaagagaaaaaatcatccaaaaagcga
aaattgcatatatcaacagatgtcgccggtaagaaagtgaaggggctgagtgatagggcc
aagtgcctcacgcattgtacgtcgtcgttaaagtaa
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