Lycium barbarum (goji berry): 132632257
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Entry
132632257 CDS
T09483
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132632257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lbb03009
]
132632257
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
132632257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Utp13
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_SPT8
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
WD_LRWD1
PEP5_VPS11_N
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_DCAF12
WDR54
Beta-prop_HPS5
WD40_like
PROPPIN
SGL
Beta-prop_VPS8
Nbas_N
Beta-prop_IFT140_2nd
Cytochrom_D1
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
132632257
NCBI-ProteinID:
XP_060204098
LinkDB
All DBs
Position
3:124604082..124615876
Genome browser
AA seq
867 aa
AA seq
DB search
MELKKSYKCVQSLQQFYTGGPYAVASDESFLVCACGDTIKIVDLSNASIKSTIEGDSEAV
TALTLSPNNNFLFSASHSRQIRVWDLSTLKCLRSWKGHEGPVMGMACDASGGLLATAGAD
RKVLVWDVDGGFCTHYFKGHKGVVTSIIFHPDPNRLLLFSGGDDGSVRVWDLTRKKCLST
LEKHQSAITSMAISQDGWTLLSAGRDKVVNLWNLHDYGCMTTIPMFESLEAVCIIGPESP
FAASLASSTNPQTKKRSDVPSINFITVGERGLVRIWSADRALCLFEQKSSNITVSSDDED
SKRGFTSALILPASQELLCVTADQQFFLYYPEGSEGSLNLVLRKRFVGYNEEIADMKFLG
DEEQFLAVSTSVEQVRVYDLTTMSCSYVLAGHTDVILCLDTCVSSSGRTLIVTGSKDNSV
RLWDCQRKACVGVGIGHMGAVGAVVFSKKQRNFFVSGSSDRTLKVWYFDGVSDNNEEVLT
LKAKAVVAAHDKDINSLAIAPDGSFVCSGSQDRTACIWRLPDLVSVVTLKGHKRGIWSVE
FSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGAQFVSCGGDGLVK
LWTVNTNECVATYDQHEDKIWALAVGKKTEMLATGGGDAVINLWHDSTALDKEEAFRKEE
EGVLKGQELENALIDADYTRAIQIAFELRKPHKLLELFRGLFRKRDEGDQIGKALKALAK
EEFRLLLEYVREWNTKPKNCHVAHFVLSWAFRILPSTEFVEIRGIVELLEGLIPYTQRHF
NRLDRLERSTFMLDYTLTRMLVIEPEGNEGKLEDKDPKLSNAADSEQLSDIASTEQEQHH
KELKEKRASKKRKNKSKDISSKKVKGV
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaagaagagttacaaatgtgtgcagtctctccagcaattttacactggcggc
ccatacgctgtcgcttcagatgaatcatttctcgtgtgtgcgtgtggtgacactatcaaa
atcgttgatttatcaaatgcttcaataaaatcaacgatagagggtgattccgaagcagtg
acagctcttactcttagccctaataataatttcctcttttctgctagtcatagccgacaa
attagggtttgggacctttccacattgaaatgcctacgctcctggaaggggcatgaagga
ccggtgatgggcatggcttgcgatgcatcaggtggattgctggcaacggctggggctgac
aggaaagttctcgtgtgggacgtagatggaggcttctgcactcattatttcaaaggtcac
aaaggggttgtcaccagcattatatttcatcctgacccgaatcggctgctgcttttctct
ggtggtgatgatggttctgtaagggtctgggatctgacgaggaagaaatgtctgtcaact
ctagagaaacatcaatcagctattacttccatggcaatatctcaagacgggtggactttg
cttagcgcagggagagacaaggttgtaaatttgtggaatttacatgattatggctgcatg
accaccataccaatgtttgagtcacttgaagctgtgtgcataattggtccagaatctcct
tttgctgcatccctggcttcatcgactaatccacagacaaagaagagaagtgatgtacca
tcaattaatttcattactgttggcgagcgaggattagtacgtatatggagtgctgataga
gcactgtgcctttttgaacagaaatcctccaatattaccgtaagctctgacgatgaagat
tcaaagagaggctttacttctgctttgattttgcctgcaagtcaggagttactttgtgtt
acagctgaccagcagttttttctttattatccggagggatctgaaggtagtctgaatcta
gttcttaggaagaggtttgttggatacaatgaagagattgcagatatgaaatttttgggt
gacgaggaacagttccttgctgtttcgacaagcgtagagcaggtgcgagtttatgatctt
acaacaatgtcgtgctcttatgtattggctgggcatactgatgttattttgtgccttgat
acttgtgtatcaagttctggaagaacactaattgtaacaggaagtaaggacaactctgtt
aggttatgggattgccaaaggaaagcttgtgttggagttggcataggtcacatgggagct
gttggtgctgttgttttttcaaagaaacagcggaatttctttgtgagtggtagtagtgac
cgtactctaaaggtatggtattttgacggtgtctctgacaacaatgaagaagttctaact
ttgaaagcaaaagcagttgtagctgcacatgacaaggatattaactctttggcgatagca
ccagatggcagttttgtttgcagtggttcccaggatcgcactgcttgcatctggagactt
cccgacctagtatcagtggttacattgaaaggacataaaagggggatatggtctgtggag
ttttccccagttgatcaatgtgtgatgacagcttctggagataagacgataaagatttgg
gcaatatctgatggatcatgtttgaaaacatttgaagggcatacatcaagcgtgttaaga
gcgtcatttcttacccgtggcgcccagtttgtttcttgtggtggtgatggtctggtgaag
ttgtggacagttaataccaatgagtgtgttgcaacatatgaccagcatgaggataagatt
tgggccctggctgttggtaagaaaacagaaatgcttgcaacaggtggcggtgatgcagtg
atcaatttatggcatgactcaacagctttagataaagaggaagcttttcgtaaagaagag
gaaggtgttctaaagggtcaagagctagaaaatgctttaatagatgctgactacactaga
gcaattcagattgcatttgagcttcgcaaaccgcataaacttctagagttatttcgtgga
ctcttcaggaagagagatgaaggggatcagataggaaaagcactaaaggctcttgctaag
gaagagtttcgcttgcttttggaatatgtccgggaatggaacacgaagccaaagaattgt
catgttgcacattttgttctttcctgggcattccgtattctcccatctaccgagtttgtt
gagataaggggcattgtggaacttcttgaaggtcttattccttatactcagaggcatttt
aatagactagataggttagaaagaagcacattcatgttggactatactttaactagaatg
ttggttattgagccagaaggtaatgagggaaaattggaggacaaggatcccaaactatct
aacgctgcagatagcgagcagttaagtgatattgcttcaacggagcaagagcagcaccat
aaagaactgaaagaaaagagagcttcaaaaaagcggaaaaacaaatcgaaagacatctct
agtaagaaggtgaagggggtgtaa
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