KEGG   Lycium barbarum (goji berry): 132632257
Entry
132632257         CDS       T09483                                 
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    132632257
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lbb03009]
    132632257
Ribosome biogenesis [BR:lbb03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    132632257
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Utp13 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_IFT122_1st NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_NWD2_C Beta-prop_WDR19_1st WD_LRWD1 PEP5_VPS11_N Beta-prop_WDR75_2nd Beta-prop_Vps41 Beta-prop_DCAF12 WDR54 Beta-prop_HPS5 WD40_like PROPPIN SGL Beta-prop_VPS8 Nbas_N Beta-prop_IFT140_2nd Cytochrom_D1 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 132632257
NCBI-ProteinID: XP_060204098
LinkDB
Position
3:124604082..124615876
AA seq 867 aa
MELKKSYKCVQSLQQFYTGGPYAVASDESFLVCACGDTIKIVDLSNASIKSTIEGDSEAV
TALTLSPNNNFLFSASHSRQIRVWDLSTLKCLRSWKGHEGPVMGMACDASGGLLATAGAD
RKVLVWDVDGGFCTHYFKGHKGVVTSIIFHPDPNRLLLFSGGDDGSVRVWDLTRKKCLST
LEKHQSAITSMAISQDGWTLLSAGRDKVVNLWNLHDYGCMTTIPMFESLEAVCIIGPESP
FAASLASSTNPQTKKRSDVPSINFITVGERGLVRIWSADRALCLFEQKSSNITVSSDDED
SKRGFTSALILPASQELLCVTADQQFFLYYPEGSEGSLNLVLRKRFVGYNEEIADMKFLG
DEEQFLAVSTSVEQVRVYDLTTMSCSYVLAGHTDVILCLDTCVSSSGRTLIVTGSKDNSV
RLWDCQRKACVGVGIGHMGAVGAVVFSKKQRNFFVSGSSDRTLKVWYFDGVSDNNEEVLT
LKAKAVVAAHDKDINSLAIAPDGSFVCSGSQDRTACIWRLPDLVSVVTLKGHKRGIWSVE
FSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGAQFVSCGGDGLVK
LWTVNTNECVATYDQHEDKIWALAVGKKTEMLATGGGDAVINLWHDSTALDKEEAFRKEE
EGVLKGQELENALIDADYTRAIQIAFELRKPHKLLELFRGLFRKRDEGDQIGKALKALAK
EEFRLLLEYVREWNTKPKNCHVAHFVLSWAFRILPSTEFVEIRGIVELLEGLIPYTQRHF
NRLDRLERSTFMLDYTLTRMLVIEPEGNEGKLEDKDPKLSNAADSEQLSDIASTEQEQHH
KELKEKRASKKRKNKSKDISSKKVKGV
NT seq 2604 nt   +upstreamnt  +downstreamnt
atggaattgaagaagagttacaaatgtgtgcagtctctccagcaattttacactggcggc
ccatacgctgtcgcttcagatgaatcatttctcgtgtgtgcgtgtggtgacactatcaaa
atcgttgatttatcaaatgcttcaataaaatcaacgatagagggtgattccgaagcagtg
acagctcttactcttagccctaataataatttcctcttttctgctagtcatagccgacaa
attagggtttgggacctttccacattgaaatgcctacgctcctggaaggggcatgaagga
ccggtgatgggcatggcttgcgatgcatcaggtggattgctggcaacggctggggctgac
aggaaagttctcgtgtgggacgtagatggaggcttctgcactcattatttcaaaggtcac
aaaggggttgtcaccagcattatatttcatcctgacccgaatcggctgctgcttttctct
ggtggtgatgatggttctgtaagggtctgggatctgacgaggaagaaatgtctgtcaact
ctagagaaacatcaatcagctattacttccatggcaatatctcaagacgggtggactttg
cttagcgcagggagagacaaggttgtaaatttgtggaatttacatgattatggctgcatg
accaccataccaatgtttgagtcacttgaagctgtgtgcataattggtccagaatctcct
tttgctgcatccctggcttcatcgactaatccacagacaaagaagagaagtgatgtacca
tcaattaatttcattactgttggcgagcgaggattagtacgtatatggagtgctgataga
gcactgtgcctttttgaacagaaatcctccaatattaccgtaagctctgacgatgaagat
tcaaagagaggctttacttctgctttgattttgcctgcaagtcaggagttactttgtgtt
acagctgaccagcagttttttctttattatccggagggatctgaaggtagtctgaatcta
gttcttaggaagaggtttgttggatacaatgaagagattgcagatatgaaatttttgggt
gacgaggaacagttccttgctgtttcgacaagcgtagagcaggtgcgagtttatgatctt
acaacaatgtcgtgctcttatgtattggctgggcatactgatgttattttgtgccttgat
acttgtgtatcaagttctggaagaacactaattgtaacaggaagtaaggacaactctgtt
aggttatgggattgccaaaggaaagcttgtgttggagttggcataggtcacatgggagct
gttggtgctgttgttttttcaaagaaacagcggaatttctttgtgagtggtagtagtgac
cgtactctaaaggtatggtattttgacggtgtctctgacaacaatgaagaagttctaact
ttgaaagcaaaagcagttgtagctgcacatgacaaggatattaactctttggcgatagca
ccagatggcagttttgtttgcagtggttcccaggatcgcactgcttgcatctggagactt
cccgacctagtatcagtggttacattgaaaggacataaaagggggatatggtctgtggag
ttttccccagttgatcaatgtgtgatgacagcttctggagataagacgataaagatttgg
gcaatatctgatggatcatgtttgaaaacatttgaagggcatacatcaagcgtgttaaga
gcgtcatttcttacccgtggcgcccagtttgtttcttgtggtggtgatggtctggtgaag
ttgtggacagttaataccaatgagtgtgttgcaacatatgaccagcatgaggataagatt
tgggccctggctgttggtaagaaaacagaaatgcttgcaacaggtggcggtgatgcagtg
atcaatttatggcatgactcaacagctttagataaagaggaagcttttcgtaaagaagag
gaaggtgttctaaagggtcaagagctagaaaatgctttaatagatgctgactacactaga
gcaattcagattgcatttgagcttcgcaaaccgcataaacttctagagttatttcgtgga
ctcttcaggaagagagatgaaggggatcagataggaaaagcactaaaggctcttgctaag
gaagagtttcgcttgcttttggaatatgtccgggaatggaacacgaagccaaagaattgt
catgttgcacattttgttctttcctgggcattccgtattctcccatctaccgagtttgtt
gagataaggggcattgtggaacttcttgaaggtcttattccttatactcagaggcatttt
aatagactagataggttagaaagaagcacattcatgttggactatactttaactagaatg
ttggttattgagccagaaggtaatgagggaaaattggaggacaaggatcccaaactatct
aacgctgcagatagcgagcagttaagtgatattgcttcaacggagcaagagcagcaccat
aaagaactgaaagaaaagagagcttcaaaaaagcggaaaaacaaatcgaaagacatctct
agtaagaaggtgaagggggtgtaa

DBGET integrated database retrieval system