KEGG   Lycium barbarum (goji berry): 132632481
Entry
132632481         CDS       T09483                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    132632481
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lbb03021]
    132632481
Enzymes [BR:lbb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     132632481
Transcription machinery [BR:lbb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     132632481
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CENP-B_dimeris
Other DBs
NCBI-GeneID: 132632481
NCBI-ProteinID: XP_060204424
LinkDB
Position
3:129716520..129729082
AA seq 1219 aa
MTISDITEEVGCSSGKEKLSNGSARMDFDIDDLFEVGDDDWDDDEEEDEDEDDDLDVVSI
KELGESFLKTFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFASVGEIHVEPGYDPS
KRGEGDWKHASIKFGKVSLERPKFWAGEKFSVDGGKEYLDLWPRHALLQNMTYSARIMVE
THVQVYTKKLVRSDKFKTGVERFVDKELEMEDKRDVLVGRIPVMVNSELCWMNGADKPDC
EFDHGGYFIVKGAEKTFIAQEQICLKRLWVYSNPTWMVGYRPGDKRKRIYIKLTETLKIE
HIKGGEKALSVYFLAEMPIWILFFALGVSSDREVVNLIDVDIEDSNIVNILMASIHEADK
NCEDFRKGKKALAYVDRLIKSCKFPPQESVEQCIKEYLFPNLSGFKQKARFLGYMVKCLL
HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE
HYLDASIITNGLSRAFSTGHWCHAYKRMERVSGVVATLRRTNPLQMTADMRKTRQQVTYT
GKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTILKPLLETLFRCGMQKL
VDDSATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEIRI
FSDAGRILRPLLVVSNLKKIKALKGGDYGFQALLDNGIIELIGPEEEEDCRTAWGVEYVL
KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN
NRVDTNTHQLYYPQRPLFRTMLSDSLGKPKNARHQKGMLPRPEYYNGQCAIVAVNVHLGY
NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAVAKKLKVEDSVNFGKTQSKIGRVDS
LDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS
LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL
EASLGKGIALGGGQKYATPFSTLSVDAIMEQLHGRGFSRWGNERVYNGRTGEMVNSLIFM
GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
HERLFTLSDSSQMHICGKCKNMANVIQRSVQGGKVRGPFCRFCESVEDIVKVNVPYGAKL
LCQELFSMGISLKFDTEIC
NT seq 3660 nt   +upstreamnt  +downstreamnt
atgacaatttctgatatcacggaagaagtgggatgtagtagtggtaaagagaagttatcc
aatggatcagcaaggatggattttgatatagatgatctttttgaagtaggtgatgatgat
tgggacgatgacgaggaagaagatgaggatgaggatgatgatcttgatgtggtttcaata
aaagagctgggtgaaagtttcttgaaaaccttctgtaaaaaggcatcaactggttttttt
gagaagtatggtttaatcagtcaccagattaattcatataatgacttcatcaactatgga
atccaaagggtgtttgcctcggttggggagatccatgttgagccaggttatgatccatca
aagagaggtgaaggtgattggaagcacgcttctataaagtttgggaaagtaagccttgag
cggccaaagttttgggcaggggagaagttctctgtggacggtgggaaagagtacctggat
ttgtggccacggcatgctctccttcagaacatgacttattccgctagaattatggttgaa
actcatgttcaggtgtatacaaaaaagctagttagaagtgacaagttcaaaactggggta
gaacgatttgttgacaaggagttggagatggaagataaaagagatgtcttggttgggaga
atccctgtgatggtgaactcagagttgtgctggatgaatggtgctgacaagcctgattgt
gaatttgatcatgggggatacttcatagtcaaaggggctgaaaagaccttcattgcacag
gagcagatttgtttaaaaagactctgggtgtatagcaatcccacttggatggttggatat
cgccctggtgataaaaggaagagaatctacattaaactgactgagaccttgaagattgag
cacattaaaggaggagaaaaagccctcagtgtgtacttcctggcagaaatgccaatttgg
atcttgttttttgctctaggtgtatcctctgacagggaggtagtaaatttaatagatgtg
gatattgaagatagtaatatcgtcaatatactaatggcttcaatccatgaggctgataag
aattgtgaggatttcaggaaggggaaaaaggctcttgcttatgttgatagacttataaag
agctgtaaatttccacctcaagaatctgttgagcagtgcataaaagaatacctgttccct
aatcttagtggtttcaagcagaaggctcgcttccttggctatatggtaaagtgcctgttg
cactctttcattggtcgcagaaaggttgacaacagagatgattttcgaaacaagcgattg
gagctggctggtgagcttcttgaacgggagctcagggcgcacattaaacatgccgaaagg
cgtatggtgaaggcaatgcaaagagatctttatggagatcgacaagtgcagccaattgag
cactatttggatgcatcaataatcaccaatggtctctccagggctttttccactggacat
tggtgtcacgcttacaagagaatggagagggtttctggtgtagttgcaactcttagacga
acaaatccattgcaaatgactgctgatatgaggaaaacgcgtcagcaggttacatacacc
gggaaggttggcgatgctagatacccacatccttcacactggggaaaggtatgttttctc
tctaccccagatggtgaaaattgtggcctggtaaaaaatttggctagtatgggtcttgtc
agcacaactattttgaaaccacttcttgagacattgttccggtgtgggatgcaaaaatta
gtagacgatagtgccacctcactccacggaaagcaaaaggtactactagatggggagtgg
gttggagtatgtgaagattctgcactcttcgtttcaaagctaagacgtaagcgccgcagg
aatgaagtaccacaccaggttgaagttaagagagatgagctgcagggtgaaattcgcata
ttttctgatgcggggaggattctgcgccctcttcttgttgtttcaaatctaaagaaaatc
aaagctctgaaagggggagattatggcttccaagctcttctggacaatgggattattgag
ctcataggacctgaagaagaagaagactgtcgaactgcatggggagttgaatacgtcttg
aaagcagataaagagaacccacccgcaaagtatacccattgtgagctggacatgtcattt
ctgttaggcttgagctgtggtattatcccatttgcaaaccatgatcatgctaggagggtc
ctctaccaatcagagaagcactctcaacaggcaattgggttttcaaccgtgaatccgaac
aatagagttgatacgaatacccatcaattatattatcctcagaggccacttttccggaca
atgctgtcagattcccttgggaaaccaaaaaatgctcgtcaccagaaaggaatgcttcct
cggcctgaatactacaatgggcaatgtgctattgtcgcagtaaatgttcaccttggctat
aaccaagaagattcattggttatgaatcgtgcttcactggagcgtggaatgtttcgatcg
gagcatgttaggagctacaaggctgaggtcgataataaggaagctgttgctaagaagcta
aaggttgaggactctgttaactttgggaaaacccagagtaaaattggacgagtggacagc
ctggatgatgatggttttccattcattggggcaaatctccagagcggagatattataatt
gggaaatttgctgaatcaggggctgatcacagtgtcaagctgaagcacacggaaaggggc
atggttcagaaggttttgctctccgctaatgatgaagggaagaattttgctgttgtatct
ctcagacaagttcgttctccatgtcttggagacaagttctctagcatgcatggacaaaag
ggtgtccttggatttctggaatctcaggagaactttccttttacagttcaggggattgtt
ccagatattgtaatcaatccccatgcatttccttcaaggcaaactcctggtcagctgctg
gaagcttctttggggaagggcattgccctaggtggtggtcaaaaatatgccactcccttc
tccactttatcagttgatgccataatggagcagcttcatgggcgaggattctccagatgg
ggaaatgagagagtttacaacggccggaccggtgaaatggttaattccctaattttcatg
ggcccaacattctatcaacgcctcatccatatggctgaagacaaggtgaaattccgtaac
actgggcctgtccatccccttactcgccaacctgtggcagacagaaaacgttttggtgga
attaagtttggtgaaatggaacgcgactgtcttatagctcatggtgctgcagcaaatttg
catgaacgtcttttcacactcagtgactcctcccagatgcacatctgtggtaagtgcaag
aacatggcaaatgtaatccagagatctgtgcaaggtggtaaggtaaggggtccgttttgc
cggttctgtgaatcagttgaagatatagtgaaagttaatgtgccatatggtgcaaagttg
ctgtgccaggagctcttcagcatgggcatatctctcaagtttgacactgagatttgctaa

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