Lycium barbarum (goji berry): 132632548
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Entry
132632548 CDS
T09483
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132632548
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
132632548
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
FLIC_barrel
Motif
Other DBs
NCBI-GeneID:
132632548
NCBI-ProteinID:
XP_060204512
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Position
3:130828787..130831300
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AA seq
403 aa
AA seq
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MGAFSLSLLFILSFLLLLPSLFASSSPQAVVDEVHRSLNGSRRNLGYLSCGTGNPIDDCW
RCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVTPKPGTLRHAVIQTEP
LWIIFKSDMVIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQ
GGNAMVRSSPSHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCHDGLIDAIMGSTAITISN
NFMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWE
MYAIGGSASPTINSQGNRFLAPDIRFSKEVTKHEDAPESEWKSWNWRTEGDLMLNGAYFT
QSGAGASSSSYAKASSLSARPSSLVSNLVSGSGVLNCRKGSRC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctttctctctttctctactattcatcttgtctttccttctccttcttccgtcc
ctctttgcctcctctagtcctcaagctgttgttgatgaagtgcataggagcctaaatggt
tcaaggaggaacttgggctatctttcatgtggtactggaaacccaatcgatgactgctgg
cgttgtgatcccaactgggagaaaaaccgccagcggttagctgactgcgccattggcttt
ggcaaaaacgccattggtggcagggacggtaaaatctacgtcgtcactgactctggtgac
gacgaccctgtcacaccaaagccggggactctcaggcacgctgtcattcagacagaaccc
ttgtggattattttcaaaagcgacatggtcatccaattaaaagaagaactaattatgaac
tcatttaaaacaattgatggaagaggcgctagtgtacatatttcgggcggtccatgtata
actatacagtacgtgacgaatattattatacatggaattcacatacacgattgtaagcaa
ggaggaaatgctatggtgcggagtagtccatcgcattatgggtggaggactgtttctgat
ggtgatggagtgtctatatttggtgggagccatatttgggtggatcattgttctttatct
aactgtcatgacggcttgattgacgctattatggggtccacagcgattaccatttcaaac
aatttcatgacgcaccatgataaagtcatgctcctgggacacagtgattcttatactcaa
gacaagaacatgcaagtcactattgcttttaatcacttcggtgaaggccttgtccaaaga
atgccaagatgtagacatggttacttccatgtggtgaacaatgactacacacactgggaa
atgtatgccattggtggaagtgctagtcccaccatcaatagccaaggcaacagattcctt
gcccctgatatcaggttcagcaaagaggttacaaaacacgaggatgcaccagagagtgaa
tggaagagttggaactggaggacagaaggggacctaatgttaaatggtgcatattttaca
caatcaggagctggagctagttcatcgagttatgctaaagcgtcaagcttaagtgcaagg
ccctcttcattagtcagcaaccttgtctccggttctggagttctcaattgccgaaagggt
tctcgttgttga
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