KEGG   Lycium barbarum (goji berry): 132632622
Entry
132632622         CDS       T09483                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    132632622
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbb03019]
    132632622
   03009 Ribosome biogenesis [BR:lbb03009]
    132632622
   04131 Membrane trafficking [BR:lbb04131]
    132632622
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lbb04147]
    132632622
Messenger RNA biogenesis [BR:lbb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     132632622
Ribosome biogenesis [BR:lbb03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    132632622
Membrane trafficking [BR:lbb04131]
 SNARE
  SNARE associated proteins
   Others
    132632622
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    132632622
Exosome [BR:lbb04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   132632622
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N CDC48_2 AAA_16 AAA_33 AAA_2 AAA_5 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase AAA_17 AAA_28 AAA_18 Mg_chelatase nSTAND3 ATPase_2 IstB_IS21 Viral_helicase1 Parvo_NS1 AAA_lid_PRS2_C ABC_tran AAA_7 NACHT TsaE NB-ARC Vps4_C DUF815 RCF1-5-like_lid Zot PEX6_4th
Other DBs
NCBI-GeneID: 132632622
NCBI-ProteinID: XP_060204599
LinkDB
Position
3:complement(132561877..132566559)
AA seq 810 aa
MAHPSSSTSDPKNNKKDFSTAILERKKSPNRLIVDEALNDDNSVVSMHPNKMEELQLFRG
DTVLLKGKKRKDTVCVVLADEQCEEPKIRLNKVVRANLRIRLGDVVSVHQCPDVKYAKRV
HILPIDDTVEGMTGNLFDAYLKPYFLESYRPVRKGDLFAVRGGMRSVEFKVVETEPGEYC
VVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGMRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIGRAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFEEAEK
NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDP
ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLDDNVDLERVAKDTHGYVGSDLAALC
TEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGASNPSALRETVVEVPNTS
WEDIGGLENIKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGG
AADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQ
IFKACLRKSPVSKDVDLAALARYTHGFSGADITEICQRACKYAIRENIEKDIERERKRGE
NPEAMDEDDTDDVAEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGLGTEFKFA
EHAANATETGATSDPFASVNAAGDDDDLYS
NT seq 2433 nt   +upstreamnt  +downstreamnt
atggcacacccaagttcttccacttcagacccgaaaaacaataaaaaagatttttcgact
gcaattttggagaggaagaaatcccctaaccgccttattgttgatgaggccttaaatgat
gacaattcagttgtgtctatgcaccctaataaaatggaagagctgcaactgtttcgagga
gatactgtcttgctaaagggtaaaaaacgaaaggacactgtttgtgttgtccttgcagat
gaacaatgtgaagaacctaagatcagattgaacaaagtcgttcgagctaatcttagaatt
cgtcttggggatgttgtgtctgtacaccagtgtcctgatgttaagtatgcgaagcgtgtt
cacattcttccaattgatgacacagttgaggggatgactggcaacctgtttgatgcgtac
ttgaagccatacttcttggagtcttaccgccctgtcaggaagggcgatctctttgcagtc
agaggtggtatgcgtagtgttgaatttaaagtggttgagacggagcccggagaatattgt
gttgttgcacctgatacagagatcttttgcgagggagaaccaatcaagcgtgaagatgag
gagagactaaatgaagttggatatgatgatgttggtggtatgaggaagcaaatggctcag
attcgtgagctggttgaactccctctaaggcatccacagttgttcaagtcaattggtgtg
aaaccaccaaaaggtattcttctgtatggtcctcctggatcggggaaaaccttgattggc
agagctgtggcaaatgagactggtgcatttttctttttaattaatgggcctgaaataatg
tccaaattggctggtgagagtgagggtaacttgaggaaggcatttgaggaagctgaaaag
aacgcaccatctatcatatttattgatgagttagactcaattgctccaaagagagaaaag
acacacggcgaagttgagcggcgcatagtttcccaacttctgacattaatggatgggctc
aagtctcgatctcatgtgattgtcatgggagccaccaacagaccaaacagtattgatcct
gctctccggagatttgggagatttgaccgagagattgacatcggcgtaccagatgaagta
gggcggctggagatcctacggattcatactaaaaatatgaagctcgatgataatgttgat
ctagagagagttgcaaaagacacacatggttatgtcggatctgatcttgctgccttgtgc
accgaggctgcgttgcagtgtatcagggagaaaatggatgttattgacttggaggacgag
accattgatgctgaagtgttgaattcaatggctgtgactaatgagcattttcaaactgct
ctgggtgcttcaaatccatcagctttacgagaaacggttgtggaggtacccaacacctct
tgggaggatattggagggctggaaaatatcaagcgggaactccaagagactgttcagtat
ccggttgagcatcctgagaagtttgagaagtttggcatgtcaccctctaaaggggttctt
ttctatggacctcctggttgtggcaaaactttacttgccaaagctattgcaaacgagtgt
caggctaacttcataagtgtgaaaggaccagagttgcttacaatgtggtttggagaaagt
gaagcaaatgttcgggaaatatttgacaaggcacgacagtctgctccgtgtgtactgttc
tttgatgaactcgattccattgctacgcagagggggaattctgtgggagatgctggtggt
gctgctgatagagtactcaatcaattgttgacagagatggatggtatgacggcaaagaaa
acagtattcatcattggggcaacaaataggccagacattattgaccctgcattgctcaga
ccagggcgtctagaccaattaatttacattcccctcccagatgaagcttcccgtcttcaa
atcttcaaagcatgtttgcggaagtcccccgtctctaaggacgtggatctggcagctcta
gcacggtatacacatggttttagtggtgcagacataactgagatttgtcaacgagcatgc
aaatacgccattagagaaaacattgaaaaggatattgagagagagaggaagagaggagaa
aaccctgaagcaatggatgaagatgatactgatgacgtggctgaaataaaggctgcacac
tttgaggagtccatgaaatatgctagacgaagtgtgagtgatgctgacattaggaagtac
cagctttttgctcaaacattacagcaatcacggggacttggaactgaattcaaattcgca
gagcacgcagctaatgctacagaaaccggggcaacatccgacccattcgcttctgttaat
gctgccggagacgatgacgacttgtatagttaa

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