Lycium barbarum (goji berry): 132632881
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Entry
132632881 CDS
T09483
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132632881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132632881
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132632881
Spliceosome [BR:
lbb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132632881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
AAA_22
DEAD
PWI
AAA_19
T2SSE
nSTAND3
AAA_30
SRP54
PhoH
ABC_tran
AAA_23
AAA_16
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
132632881
NCBI-ProteinID:
XP_060204988
LinkDB
All DBs
Position
3:complement(137934209..137955588)
Genome browser
AA seq
1050 aa
AA seq
DB search
MGTELRTWVSDKLMSLLGYSQSTVVSYVLNLAKKASSAANLTTQLVDDMGMSSSNETRVF
AQEIFSRVERKTTGPNLYLQQEREAAMLARKQKTYTLLEADDDDENIGGVEINSVPSQTR
KEDSRKKKFRRRVETHGDEDDEVVRDEEDERRVRRRTSQDQGDSDNSESEEEILRDQRER
EELEQHLRERDAAGTRKLAEPKLSRKEEEEAIRRSDALERDDIGSLRKVSRQEYLKKREQ
KKLEELRDDLEDEQYLFEGVKLTEAEQRELRYKKEIYELVKKQTEDTGDMDEYRIPDAYD
LEGGVNQEKRFSVASQRYRDPNAAEKMNPFAEQEAWEEHQIGKATLKFGSKDRKSRSEDY
QYVFEDQIEFIKAAVMDGVNVDQEPSTESIEKTMAKSAFEKLQEDRKTLPMYPYREDLLQ
AINDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAARVSQEMGV
KLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDI
LFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDCAPIFKIPGRRFPVEIHYTKAPEADY
LDAAVVTALQIHVTQPPGDGDILIFLTGQEEIETAEEIIKHRIKGLGTKIAELIICPIYA
NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKMKSYNPRTGMESL
LVTPISKASANQRAGRSGRTGPGKCFRLYTAYNYMNDLDDNTVPEIQRTNLANVVLSLKS
LGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIV
ASDKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHVGNVGDHIALLKVYSSW
KETNFATQWCYENYIQVRSMKRARDIRDQLEGLLERVEIALTSNENDYEAIKKAITSGFF
PHSAKLQKNGSYRTIKHPQTVNIHPSSGLSQVLPRWVVYHELVLTTKEYMRQVTELKPEW
LVEIAPHYYQLKDVEDSSSKKMPRGSGRAS
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgaattgaggacatgggtttcagataaattgatgtctcttctggggtactca
caatccacagttgtctcatatgttcttaatcttgctaagaaagcttcatcagctgccaat
ctaacaactcagcttgtagatgatatgggtatgtcgtcctccaatgaaacaagagtgttt
gctcaagaaatattttccagagttgagcgcaagacgacagggccaaatctgtatttacaa
caagaaagggaggctgcaatgttggcgaggaagcaaaagacatacacacttttggaggct
gatgacgatgatgagaatattggcggtgtggaaattaattctgttccctctcagactagg
aaagaggattcccgtaaaaagaagtttaggaggagggttgaaacccatggagacgaagat
gatgaggtagtgagggatgaggaggatgaaagaagggttaggagacgaacttcccaagac
caaggtgacagtgacaactctgagtcagaagaagaaatacttcgggaccaaagagagagg
gaggagttggaacaacatctcagagagcgagatgctgcagggactagaaagttggcagag
ccaaaattatcaaggaaggaggaagaagaggcaatcaggaggtctgatgcattggagaga
gatgacattggatctttaaggaaagtttcaagacaagaatatttgaagaaaagggagcag
aagaagctcgaggaactccgagatgatttagaggatgaacaatacttgtttgagggagtg
aagctaacagaagcagagcaacgtgaactaaggtataagaaggaaatatatgaactagtt
aagaagcaaacagaagataccggtgacatggacgagtataggatacctgatgcgtatgat
cttgaaggtggtgtaaatcaggaaaagagattttcggtggcttcacagcgataccgggat
ccaaatgctgctgaaaagatgaacccttttgctgaacaagaagcatgggaggaacatcag
attgggaaggcgacacttaaatttgggtcaaaagatagaaagtcaagatctgaggactat
caatatgtttttgaagaccaaattgagttcataaaggcagcagtaatggatggtgttaat
gttgaccaagagccttccactgagtcaatagagaaaactatggccaaatcagcttttgaa
aaactccaggaggataggaagacactaccaatgtatccctaccgggaagatttgctccaa
gctattaatgatcatcaggttcttgttattgttggagaaacaggctccgggaagaccacc
cagataccacagtatctgcatgaggcgggatataccaaacgtgggaagattggatgtact
caacctcgtcgagttgctgcaatgagtgttgctgcacgtgtttctcaagaaatgggtgtc
aaacttggccatgaggttggctactctattcggtttgaagactgtacctctgagaaaacg
attctgaaatatatgactgacgggatgctgctgcgagaattccttggtgagccagaccta
gcaagctatagtgtcatcatggtcgacgaggcacatgaaagaacactttcaacggacatt
ttgtttggcttggttaaggatattgctcgatttcggcctgatctgaagttgctaatatca
agtgctactctagatgcagagaagttcagtgattattttgactgtgctccaatttttaaa
attcctggaaggcggtttccagttgagatacactatacgaaagctcctgaggccgattat
ttggacgcagcagttgttaccgctcttcagatccatgtaactcaaccgccgggtgatggt
gacatattaatctttttgactgggcaggaggagattgaaacagcggaggagatcattaag
caccggataaagggtctggggacaaaaattgctgagctgataatttgcccaatatatgcg
aacctgccaacagaattacaagccaagatatttgagcccactcctgaaggggctcgtaag
gttgtcctggctacaaatattgctgaaacatcattgacaattgatgggattaaatatgtt
attgatccgggattttctaagatgaagtcttacaaccctcggactggaatggagtcatta
ctggtcactcctatatcaaaggcgtctgcaaaccaacgtgctggtcgatctggaagaaca
ggtcctggaaagtgctttcggttatacactgcatataattacatgaatgatttggatgat
aacacagttcctgaaatacaaaggaccaaccttgcaaatgttgtgctctctctcaagagc
cttgggattcatgacttactaaattttgacttcatggaccccccaccagcagaagctcta
ctgaaagcactggaattgctctttgcccttagtgcacttaacaagcttggcgagttgact
aaagttggtagaagaatggctgagtttcctctagatcccatgctgtccaagatgattgtt
gcctctgacaagtacaagtgctctgatgaaataataagtattgccgcaatgctttctgtg
ggaaattcaatcttttatcgtccaaaggacaaacaagtccacgcggataatgctcggatg
aattttcatgtgggcaatgtgggagatcatatcgctctgctaaaggtctacagttcctgg
aaggaaacaaactttgcaacccagtggtgctatgaaaattacatccaggttaggagtatg
aagagagctagggatatccgagatcaattggaaggactgctggaaagggtggaaattgcg
ttgacttccaatgaaaatgactatgaagctataaagaaggctataacatcaggatttttc
ccccactctgcaaaactacaaaagaatggatcttaccgaactattaaacacccccagaca
gttaacattcaccctagctcaggtttatcacaggttcttcccagatgggttgtttatcat
gagctggtcctgacgactaaggagtacatgcggcaggttactgaactcaaaccagaatgg
cttgtagaaatagctcctcattactatcagttgaaagatgttgaagactctagctcaaag
aaaatgcctcgaggaagtggccgtgcatcttag
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