Lycium barbarum (goji berry): 132633227
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Entry
132633227 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132633227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132633227
03012 Translation factors [BR:
lbb03012
]
132633227
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132633227
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132633227
Translation factors [BR:
lbb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132633227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
ATPase
PhoH
NACHT
AAA_11
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
132633227
NCBI-ProteinID:
XP_060205476
LinkDB
All DBs
Position
3:143225133..143237219
Genome browser
AA seq
1201 aa
AA seq
DB search
MPMPMPYTNLIQLRLKATQFLATMSSTTCLQFCPNRFHFNKTNTFPQSIVVPHKRCLHAS
VGFFCSAKGSSSSSSVVLRRKRHGRPSSSSYSPYLYQQNLGYGRFAYDEYESESDSDREI
DSSNKQLGESTLHNIEEWRWKLSMLMRKKDDQEVVSRDKKDRRDFEHISALATRMGLHCR
QYEKVVVCSKDPLPNYRPDLDVKRPQREVVLPYGLQSRVGDLLEAHLSKKSVNQENVAQN
ASLRGSKDSNSPNDKGLYDNEKPFARNVVAERILMRRSLLMRNKQEDWQGSPEGQKMREL
RRNLPAYKEREALLRAISENQVVVVSGETGCGKTTQLPQYILEAEIEAARGATCNIICTQ
PRRISAMSVAERVAAERGENLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLLDRKLE
GVTHVIVDEIHERGMNEDFLLIVLKDLLLRRPELRLILMSATLNAELFSSYFGGAPMIHI
PGFTYPVRSHFLENILEMTRYRLTPYNQIDNYGQDKMWKMQKQQTIKKRKTQIASDVEEA
LEAADFGQYNPLTRDSLSCWNPDSIGFNLIENVLCHICRNERPGAVLVFMTGWDDINAVK
DQLHAHPLLGDPSRVLLLACHGSMASAEQKLIFEKPEDGIRKIVLATNMAETSITINDVV
FVVDCGKAKETSYDAINNTPCLLPSWISKASARQRKGRAGRVQSGECYHLYPRCVFEAFA
DYQLPELLRTPLQSLCLQIKSLQLGSISDFLSKAIQSPEPLSVQNAIEYLKTIGALDENE
NLTVLGHNLSMLPVEPKLGKMIILGAVFNCLDPVLTVVAGLSARDPFLMPFDKKDLAESA
KAQFSARDFSDHLALVRAYEGWKDAERQQSGHEYCWRNFLSAQTLRAMDSLRKQFLHLLK
DIGLVDSFQSCNAWSNDQNLVRAIICGGLFPGICSVVNKEKSISLKTMEDGGVLLYSNSV
NAQEPRIPYPWLVFNEKVKVNSVFLRDSTAVSDSVVLLFGGSIFGKALDGHLMMLGGYLE
FFMSPSLANTYVSLKRELNELVHKKLSDRNFDIGSHGELLEAVRLLVSEDQCEGKFVFGR
KPTPKKSAKELQKTIIPTKGSGGENPKSHLQTLLLRAGHQSPNYKTTQLKNNKFRSTVIF
NGLNFAGQPSSSKKEAEKDAAAEALQWLTGETQSSSKAVEHMSALLKKSKSKKQLHSTKW
R
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgcccatgccttacactaaccttattcaattgaggctcaaggccactcaattt
ctggccaccatgtcttccaccacttgtctccaattttgtccaaatcgtttccactttaat
aaaactaacactttccctcaatccatagtagtacctcacaaacgttgccttcatgcaagt
gttggatttttttgctcagctaaaggctcttcttcttcgtcgtctgttgtgttgaggcgg
aaaagacatggtcgtccttcttcttcgtcatattctccgtatttatatcagcagaattta
gggtatgggcggtttgcttatgatgagtatgagtctgagtccgactctgatagagaaatt
gactcctctaataagcaactgggtgagtcaacccttcataacattgaagaatggaggtgg
aagctaagcatgctaatgcgaaaaaaagatgaccaagaggtcgtctcacgggacaaaaag
gaccgccgtgattttgagcatatatcagctctggcaactagaatgggtttacactgccgc
cagtatgaaaaagtagttgtgtgtagcaaagacccattgccaaattataggccagatttg
gatgttaagcggccacagagagaggtagtgttgccttacggattgcaaagtagggtaggt
gatcttcttgaagcacatctttctaaaaagtcagtaaaccaggaaaatgttgcacaaaat
gcttctttgagaggaagcaaagacagcaattctcccaatgataaagggctttatgacaat
gagaagccatttgcacgaaatgttgttgcggagagaattctcatgcgaaggagcttgttg
atgcgtaataaacaagaagattggcagggatctccagaaggccagaagatgcgagaactt
cgaagaaatctccctgcgtataaagagagagaggcattgcttagagccatttctgagaat
caggtggtagtcgtgtctggggaaactggatgcggtaagactacccaattgcctcagtac
attttagaagctgagatagaagctgctcgtggagctacttgcaatattatttgtactcaa
ccaaggagaatatctgctatgtctgtggctgaaagagttgctgctgagcgtggggagaat
ctgggagaatctgtgggctataaggttcggctcgagggcatgagaggaagggatacccgc
ctcttattttgcaccactggcattcttctgaggagattactgcttgatagaaagttggaa
ggtgtcactcacgttattgtagacgagattcatgaacgcggaatgaatgaagatttcctt
ttaattgtccttaaagatctccttctccgtcgacctgaattgaggctgattctgatgagt
gctactcttaatgctgagctcttctcttcctattttggcggtgctccaatgatccatatt
cctggttttacttatccagtccgaagtcattttctggaaaatatcctggaaatgactaga
taccgtttaactccatataatcaaattgataattatggtcaagacaagatgtggaaaatg
cagaaacagcagactattaagaagaggaagacccaaattgcttcagatgttgaggaagcg
ctagaagcagctgattttgggcagtataatcctctgactcgggattcactatcctgttgg
aatcctgattcaattggtttcaacctcattgagaatgtgctttgtcacatatgtagaaac
gaaaggcctggtgctgtgttggtttttatgactggttgggatgacattaatgctgtgaag
gaccagctgcatgctcatccactgttgggggatccaagcagagttttgctgcttgcatgc
catggttccatggccagtgcggagcagaaattgatttttgagaagccagaagatggaatc
aggaaaattgtgttagctaccaacatggctgaaacaagtatcaccataaatgacgtggtt
tttgtggtcgactgtggaaaggcaaaagagacatcttatgatgcaatcaacaacactcca
tgtttgcttccttcttggatttcaaaagcttctgctcgacaaagaaaaggaagagctggc
cgtgttcaatctggggagtgttatcatctctatcctagatgtgtatttgaagcttttgca
gattatcaactgccagagcttctgagaacacctttacagtccctatgtctacagattaaa
agcttacaacttggaagtatttcagactttctatccaaggcaattcagtcaccagaacca
ctatctgttcaaaatgctattgagtatttgaagacaataggggctttagatgaaaatgaa
aatctgacagtacttggacacaacttatcaatgcttccagttgagccaaaactggggaaa
atgataatattaggtgcagtattcaactgcctggatccagttcttacagttgttgctggt
ttaagtgctagagacccatttttaatgccatttgacaaaaaggatcttgctgagtctgcc
aaagcccagttttctgctcgtgacttcagtgatcatcttgctcttgttcgagcttatgaa
ggctggaaagatgctgaaaggcagcaatctggtcatgagtactgttggagaaatttcctt
tctgcgcaaactctcagagcgatggactccctccgcaagcaatttttgcatttgcttaag
gacatcggtttagttgatagctttcagagttgtaatgcctggagtaatgatcaaaatctg
gttcgagcgattatatgtggtgggttattccctggcatatgctctgttgtgaacaaggag
aagtcaatctcactgaaaacaatggaggatggtggagtccttttgtactctaactctgtc
aatgcccaagaacctaggattccatacccatggcttgtcttcaacgaaaaagttaaagtg
aattcagtattcctgcgagattctacagctgtatctgattctgtggtactcttatttggc
ggaagcatttttggaaaagctctagatggacacttgatgatgcttggaggatacttggag
tttttcatgagcccctcactggcaaatacttatgtaagcttgaagagggagcttaatgaa
cttgtccataagaaactctcggaccgtaattttgatataggcagtcatggtgagctatta
gaagctgttagattactggtgtcggaggatcaatgtgaaggtaaatttgtttttggtcgt
aaaccaaccccaaagaagtctgcaaaggagttacagaaaaccatcattccaacgaagggc
agtggtggtgaaaatccgaagtctcatctccagacgttgcttcttcgggctggccaccaa
tcacccaattacaagacaacacaactaaaaaataataagttccgctccactgtaatattc
aatgggttgaattttgctggccagcctagcagtagtaagaaggaagctgaaaaagatgca
gctgctgaagctctgcagtggttgactggtgagacccaatcgtcttctaaagctgttgaa
catatgtcagcacttttgaagaaaagcaagagtaagaaacaacttcatagtacaaaatgg
aggtaa
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integrated database retrieval system
