Lycium barbarum (goji berry): 132633465
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Entry
132633465 CDS
T09483
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03082
ATP-dependent chromatin remodeling
lbb03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132633465
03083 Polycomb repressive complex
132633465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lbb03036
]
132633465
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
132633465
Histone modification proteins
HAT complexes
HATB complex
132633465
HDAC complexes
Sin3A-HDAC complex
132633465
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
132633465
PRC2.2
132633465
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
132633465
Heterochromatin formation proteins
Other heterochromatin formation proteins
132633465
Chromatin remodeling factors
NuRD complex
132633465
NuRF complex
132633465
NuRF complex (fruit fly)
132633465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_EIPR1
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF12
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
132633465
NCBI-ProteinID:
XP_060205884
LinkDB
All DBs
Position
3:complement(147084146..147097006)
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AA seq
457 aa
AA seq
DB search
MKEKGVGEEASVDERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQFEQATYKNRQRLY
LSEQTDGSVPNTLVIANCEVVKPRVAAAQHISQFNEEARSPFVKKFKTIIHPGEVNRIRE
LPQDSKIVATHTDSPDVLIWNVESQPNRQVALGANNSRPDLILTGHQDNAEFALAMCPSE
PFVLSGGKDKSVVLWSIHDHMSTLAADQGDTKSPGSGGSNPKPSAEGPTVQARGTFQGHD
DTVEDVQFCPSSAQEFCSVGDDSCLILWDARTGSSPAVKVEKAHKADLHCVDWNPHDVNY
ILTGSADNTVRMFDRRNLTSGGVGSPVHIFEGHSAAVLCVQWSPDKSSVFGSSAEDGILN
IWDHEKVGKMADSAGRKAPKSPPGLFFRHAGHRDKVVDFHWNAADPWTIVSVSDDGSENT
GGGGTLQIWRMIDLIYRPDDEVLNELEKFKSHLLTCS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagaaaggcgttggagaagaggcgtcagtggacgagcggtacacgcaatggaag
tcacttgttcctgttctttacgactggcttgctaaccacaacctcgtttggccttccctc
tcttgtcgatgggggccccagtttgagcaagcaacttacaaaaaccgccagcgcctctac
ctttccgagcagactgacggcagcgttccaaatacgctcgtcatagctaattgtgaagtt
gtaaaacctagggttgcagcagcacaacacatatctcagttcaacgaggaagcacgttcg
ccttttgtaaagaagttcaaaactattattcatccaggcgaggtgaatcgaattagggaa
ctgcctcaggatagcaagatagtggccacacacactgacagtcctgatgttcttatttgg
aatgttgagtctcagcctaatcgtcaggttgccttgggagcaaataattctcgaccagac
ttgatattgactggacatcaagacaatgctgaatttgcgctcgcaatgtgcccgtctgag
ccttttgtgctctctggagggaaggacaaatcggttgttctgtggagcattcatgatcac
atgtctactttggcagcagatcagggagatacaaagtctcctggatctggaggaagtaat
ccgaaaccttctgcagaaggccctactgttcaagctcgaggtactttccaaggacacgat
gatactgtagaagatgttcagttttgcccttccagtgcacaggagttttgcagtgttgga
gatgattcttgcctaatactgtgggatgcaagaactggttcttctcctgctgtcaaggta
gaaaaggctcataaagctgatcttcattgtgttgattggaatcctcacgatgtaaattat
attttgactgggtcggcagacaacactgttcgcatgtttgatcgacgaaaccttacttct
gggggagtgggatcgcctgtacatatctttgagggccatagtgctgctgtgctttgtgtg
cagtggtccccagataaatcatcagtatttggaagttcggcagaagatggtatcctaaac
atctgggatcatgaaaaggttggtaagatggcggactctgctggtagaaaagctccaaaa
tctcctcctggcttattctttcgtcacgctggacatagggataaggtggttgacttccac
tggaatgcagcagatccatggactattgttagtgtctcagatgacggtagtgaaaatact
ggcggaggcggtacattacagatatggcgaatgattgatctcatttacagaccagatgat
gaggtactaaatgaactggagaagttcaagtctcacctgcttacttgttcttaa
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