Lycium barbarum (goji berry): 132634818
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Entry
132634818 CDS
T09483
Name
(RefSeq) protein SPA1-RELATED 2 isoform X1
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
132634818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132634818
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
132634818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
EIF3I
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Pkinase
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
WD40_RFWD3
WDR54
WD40_like
WD_LRWD1
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
132634818
NCBI-ProteinID:
XP_060206892
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All DBs
Position
4:2329585..2341518
Genome browser
AA seq
1059 aa
AA seq
DB search
MDEAIDEAIGDEVNGLDAIDVRQLRGKESDYTLRSGNSNMLQSHEVVTLGEGDHYQSTPN
LFTDTLDGKNLDRIGSSEHASASPRCMNDTGVMVEELTLRNYNGKNLAVVGTLGNKETMQ
ITPNQWFYHLAGGSACASSHGEAAYRDRCRTSSGLWEEEGDTLFTGLLNQNQKTLNESHN
LDGENLQNNGDKAVSNSVLPSSEGIRTKILSKSGFSEYIVKSTLKGKGVICKTQLPRISA
SESQGQIHRQCPNASSTIASVDAFVSPFQGISEMGCSVNPNGYQDGIGLRERLKAGVYKL
NKDEGLYIFKQVVALVDFAHSQGIIVQDLRPSCFKLLHSNQVVYIGASVRTQLTEGVSQS
EHNQKERSSAGKTISSLIDPCVKKQKLSEDTHLKRKWPQYPFNSGHKSAGTNTKLNAAQG
YGDDSNEKDCLKTEPNAPSKFRKPQLSIMSKPLLTSMSLKLEEKWYTSPEQFSGGGRTFS
SNIYCLGVLLFELLSSFDCERSHAAAMLDLRHRILPSCFLSEHPKEAGFCLWLLHPEPSA
RPSTREILQSEVIAGIKELPGDVSLSSIHEEESESELLLDFLMSLKDQKQKNVTKLVEEL
KCIEADVQEVQRRQRSKASCPPSHQEFLVSWENRFIQKGASSSDVYPKLPPICEDETRLI
KNIRQLESAYFSMRSNIQPSDDVAMVRRTEEIFNNQENFVLTGNNKEKYRPTDRVGEFFD
GFCKYGRYSKFRVRGMLRNADLNNSANVICSLSFDRDEEYLAAGGVSKKIKVFEYQALFN
DSVDIHYPIIEMPNKSKLSCICWNNYIRNYLAATDYDGAVKLWDVSTGQAFSHLTEHNER
AWSVDFSRVDPTKLVSGSDDHLVKLWSINEKNSVCTIRNKANVCCVQFSPDSSHFLAYSS
ADYKTYCYDLRNTSVPWCILAGHEKAVSYAKFLDAETLISASTDNSLKIWDLNKTNSSGY
SADSCVLTLKGHTNEKNFVGLSVNNGYITCGSETNEVFTYYKSLPMPITSHQFGSIDPIS
GKETDDDNGQFVSSVCWRQKSNTVLAANSSGCIKLLEMV
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagctattgatgaagctattggtgatgaggtgaatggactggatgccattgat
gttagacaacttcgaggtaaggagagtgactatactttgaggtctgggaactccaatatg
ctgcaatcacatgaagtggtcacacttggtgagggtgatcactaccaaagtactcccaat
ttgtttacagatactctcgacggaaagaatctggacaggattggatcttcagaacatgca
agtgctagtccccgttgtatgaatgatactggagtcatggttgaagaattgacgctgaga
aactacaatgggaaaaacttggctgtagttggtaccttgggtaataaggaaacaatgcag
attacgccaaaccagtggttttatcatctagcaggtggatctgcatgtgcaagctcacat
ggggaagctgcctatagagacagatgtaggacatcatcaggtctctgggaggaagaggga
gatacattgtttaccggacttctgaatcagaatcagaaaacattaaatgaaagtcataat
ctagacggtgaaaatttgcagaataatggtgataaagctgtttcgaatagtgtattaccc
tcttccgagggtatccggaccaagattttatccaagtcaggattttctgagtatattgtg
aaaagcacattgaaaggcaaaggagtcatatgcaaaacacagttaccccgaatatctgct
agtgagtctcaaggccagattcatcggcagtgtcctaatgcttcttccaccattgcaagt
gtggatgcatttgtgtcaccttttcaaggtatctctgaaatgggctgcagtgttaatccc
aatggctatcaagatggaatcggtttaagagaacggctgaaagctggggtatataaattg
aacaaagatgaaggcttgtatatcttcaaacaagttgtggctttggtggattttgctcac
tctcaaggaattatcgtacaagacttgcgtccatcttgctttaaattattgcactcaaac
caagttgtatatattggagcatctgtacgcactcagttgactgaaggtgtttcccagtca
gagcataatcagaaagagagaagttcagccgggaaaaccatttcttccttgatcgatcct
tgtgtaaagaagcaaaaacttagtgaagacacgcacctgaagaggaagtggcctcaatac
cccttcaactcaggccataaatctgctggcacaaacactaaattaaatgctgcacaaggg
tatggagatgattcaaatgaaaaggattgcctcaagacagaaccgaacgccccgagcaaa
tttagaaagcctcaactatccattatgtcaaaaccattgctgacttccatgagccttaag
ctggaggagaagtggtacaccagtcctgagcagttcagtggaggtggccgcacattttca
tcaaacatctactgcctaggggttcttctctttgagttgcttagctcatttgactgtgaa
aggtctcatgctgctgcaatgctggatcttcgccataggattcttccctcttgtttccta
tcagagcatcccaaagaagctggattttgtctttggctgcttcatccagaaccttcagca
cgtccatcaacaagggaaatcttacagtctgaagttattgctgggattaaagagttacct
ggagatgtatcgctgtcatctattcacgaagaggaatctgagtcggagttattattggac
ttcctcatgtcactgaaagatcaaaagcaaaaaaatgtgacgaagttagtggaagaactc
aaatgtatagaagcagatgtccaagaggttcagaggcggcaaagaagcaaagcctcttgt
ccgccttcacaccaggaatttcttgtttcatgggagaacaggtttattcagaaaggagca
tcaagttcagatgtgtatccgaagcttccgcctatatgtgaggatgaaactagattgatc
aagaatatcaggcagcttgagagtgcttacttctccatgagatccaatattcagccttct
gatgatgttgccatggtccgtagaactgaagaaatttttaacaatcaggagaactttgtt
ttgacaggaaacaataaagagaagtatagacccacagatcgggttggggaattttttgat
ggcttctgcaagtatggtcggtatagcaagttcagagtaaggggaatgttaagaaatgca
gatctgaataattctgcaaatgtcatttgttctctaagctttgacagggatgaggaatat
ttagctgctggcggggtgtcgaagaaaattaaagtatttgagtatcaggccctctttaat
gattctgttgacattcattacccaattatcgagatgccaaacaaatctaagctcagctgt
atttgctggaacaactatatcaggaactatctagctgccactgactatgatggtgcggtt
aagttatgggatgtgtctaccggtcaagctttttcgcatttgactgagcataatgaaagg
gcatggtctgtagatttttctcgcgtggatcccacaaagttagtcagtggaagtgacgat
catttggtgaaactttggagcatcaacgagaagaacagtgtgtgcacgatcagaaataaa
gcaaatgtttgctgtgttcagttttcccctgactccagtcattttctggcttatagctct
gctgattacaagacttactgctatgatcttcgtaatacctcagttccttggtgtatatta
gctggccatgagaaagctgttagttatgcaaaatttttggatgctgaaaccctcatttct
gcatccactgacaacagtctgaagatatgggatctcaataaaaccaactcaagtggctat
tcggccgattcttgtgtcttaaccctgaaagggcacaccaacgagaagaattttgtggga
ttatctgtgaacaatggatacataacctgcgggtcagaaacaaatgaggtctttacttat
tacaaatctctgcctatgcctattacttctcaccaatttggctctattgatccaatctct
ggtaaagagactgatgacgacaatggacaatttgtttcaagcgtttgctggagacaaaag
tcaaacactgttcttgctgccaattccagtggctgcataaaactacttgagatggtttag
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integrated database retrieval system
