Lycium barbarum (goji berry): 132634871
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Entry
132634871 CDS
T09483
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lbb03009
]
132634871
04121 Ubiquitin system [BR:
lbb04121
]
132634871
Enzymes [BR:
lbb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132634871
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
132634871
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
132634871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
FANCL_C
HEAT_GCN1
zf-ANAPC11
zf-C3HC4
HEAT_MROH2B_C
ParcG
zf-C3HC4_2
zf-RING_16
RINGv
zf-RING-like
IBR_1
C1_1
Motif
Other DBs
NCBI-GeneID:
132634871
NCBI-ProteinID:
XP_060206970
LinkDB
All DBs
Position
4:3453562..3473617
Genome browser
AA seq
1865 aa
AA seq
DB search
MGRPKGDGARTKSRPSSSSLAASLLPQGSTPLGFGGYMGASRVDSTEDSPPFLDIDSEVA
QHLKRLARKDPTTKLKALASLSQLFQQKTAKEIIPIIPQWAFEYKKLLLDYNREVRRATH
DTMTNLVGVVGRDVAPYLKSLMGPWWFSQFDSVYEVSQAAKRSFQAAFPAQDKRLDVLIL
YTSEIFRYIEEILKLTPQSMSDKNVASDELEEMHKQVVSSSLLALATLLDVVVSVQSERP
VSEAELKRASKAKVLAMSCAENLLSTHKLFLGFLKSQSSAIRSAAYSVMRSLLKNIPHAI
KETDIIHLADAILGAFQEMDPSCHSSMWAVILLFSKKFPQSWSILKIKKSALSRFWHFLR
NGCFGSQQVSYPALLLFLDVVPAQAVEAQKFLLEVFQNLWAGRSLSYSSHLDRLALFKAM
KECFLFSLKNTDRYSDAADSYRFQQTLTDQILLKLLWHEYLFSVSSKNHSMDFSSDSIQP
SHQGSRQLNVKIPEGYVRDLGKCIVEILSDIFLLEPDLLLQFCSTFQQTCLGVFQQTDSS
VENAEGVTEFLSVVNQQAVRKGETWPLVYLVGPTLSKSLPIIKTLDSPNAVRFMVAAVSI
FGPRKIIQEIFCIEPEAREFLHVFKETFVPRCLQANSPSTSMWLDLLISLLDDECLAEQW
ASIIMHATNSEELKYADGIVDSDCLSLLAMLIEKAKMRASNRSTLQVPYAAYWHHHLLDF
AAISVVRAFPPFGTSNVSYMRAVLGGIARDDETNFLSQNTLVLVLGEVLKKLTIFMMDSP
FIWVKDMCSMILIRDNNTELGFEPSMDVNEMVNFALQVLDGGFSALKCLHHEVELFSGIV
AALFVINWECNMATVFNDELGEESREKIKIRLASCELVHALHRKICNQFLFTINIDSRKI
LESILVQTVRSAVLKDENLDAVKVTSLCCHWVLELLECLCQDQFEKQKLLDRFLSQDDSW
PAWVAPDMEDRKGADLVKTESAPIDNPRVTRFVALIDRLIPKIGFDIIVAGAVSNVSPSS
TEDPSNQPTTTPQCHYSRAWLAAEILCTWKWNGGNALCSFLPYFCEYLNSECYTPEDELL
DSIVTILLDGALVYGGVAELSLSNLSAVTNMESIGEPFLRAVVSLLSRLFVDDVWGKEKA
VFLFNLLLNKLHIGETININCLRILPSVMNVIIRPLSVPFDRESASMQSASTECCEVQEA
IMDWLQRTQSFPPLNAWQTGEDMADWFYLVISCYPVRPIEGGKGLRPERYVSSTERMLLL
ELFQKQRKSSALSVINKLPVVQILLSKVILVAVAYCWEEFSEDDWEFVLYRFRWWIERAV
VVMEEVAENVNDVITNASGCEHLEVMLKRVNDTVSVEDSTPIKLASNALIGFSLFCNISG
FEAKNPAPDVSNRLKGDRWDMVKDRIIEGVLRLFFSTAATQASASSYGGEASSIVASSIL
DHSEFWDLVASLVVESSSIARDKAVKSVEIWGLSKGPVSSLYAMLFSAETLPSLRCAAYV
ILSTEPVSQLALYTVEKTSSSGGDADGSTEESLHLRAEVSPMLEKLPYEALQMDLLAFER
IKVFLAWSLLLSHVVSLPSSSPLRERMVQYIQEFATSTVLDCLFQHIPLEFCVPSSLKKK
DSELPASVSEAAKSATRAIACSSVSFCLESLWPVGPEKVASLAGAIFGLMLCILPAYVRG
WFSNIRDRSTSSAIEFFTRAYCSPPLIMNELSQIKKANFADDNFSVTVSKSACEVVATYT
KDETGMDLIICLPASYPLRPVDVDCTKSLGISEVKQRKWLMSMMSFLRNQNGALAEAICI
WKSNFDKEFEGVEECPICYSVIHTSNHSLPRLACKTCKHKFHSACLYKWFSTSHKSTCPL
CQSPF
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atggggagacccaaaggagatggagctagaaccaagtctcgtccctctagcagcagtctt
gctgcttctttactgccccaaggatctacgcctttgggattcggaggctatatgggggca
tcccgtgttgattctactgaagattctccccctttcttggatattgatagtgaagtggca
caacacttgaagaggcttgccagaaaagaccctactactaaactaaaagcattggcatca
ctatctcagttattccaacaaaagactgcaaaggagataataccgataatcccacaatgg
gcatttgaatacaagaagctgctactggattacaacagagaggttcgacgagcaactcat
gacaccatgacaaaccttgttggtgttgttggaagagacgtagctccatatttgaagtct
ttaatgggaccatggtggttttcccaatttgattccgtctatgaagtttcccaagctgca
aaaagatcatttcaggctgcttttcctgcacaagataaacgactagatgtcttgatttta
tacacatcggagatatttaggtacatcgaggaaattctgaagcttactccccagagcatg
tcagataagaatgtggcatcagatgaactggaagagatgcacaagcaggtagtttcttca
tcattattggcgttggccacccttctagatgttgtggtcagcgtacaatctgaacggcct
gtttcagaagctgagttaaagcgtgcttctaaagccaaggtcttagctatgtcctgtgct
gagaatttgttatctactcataagttatttctgggatttctgaagtctcagagctctgct
attcgctcagctgcatattcagtcatgagaagtctcttaaagaatattcctcatgctatc
aaagaaacagacattatacatctagcggatgcaatacttggagctttccaggaaatggat
ccctcatgccattcatcaatgtgggctgtgatcttactgttttccaaaaagtttccacag
agttggagtatcctgaagattaaaaaatctgctttgagtagattctggcattttcttcgc
aacgggtgttttggatcgcagcaagtatcatatcctgctctgttattatttttggatgtt
gtacctgcacaagcagttgaagctcagaagtttcttcttgaagttttccagaatctgtgg
gcaggaagaagcttgagttattcgtcacatctagaccgtcttgcactttttaaagcaatg
aaagaatgttttctatttagcctgaaaaacactgataggtattctgacgcagcagattcc
tacagatttcagcagacacttacagatcagatcctcttaaagctgctgtggcatgaatac
ctgttctctgtcagctcaaagaaccattctatggatttttcttcggatagtattcaacct
tctcatcagggatcaagacagcttaatgtcaaaattccagagggttatgtgcgggatctt
gggaaatgcattgttgaaatcctttcggatatctttttgctggagcctgatttgcttttg
caattctgttcaacattccaacagacctgccttggtgtatttcaacaaacagacagttct
gttgagaatgcagaaggggtgactgagttcttgtcagtagtgaatcaacaagcagtaagg
aaaggtgaaacttggcctctggtttacttggtgggaccaacattgtcgaagtcgttgccc
attattaaaacacttgattcccctaatgcagtgagatttatggtggctgctgtctctata
tttggtccgcggaagataattcaagagatcttttgcattgaacccgaagcaagagaattt
ttgcatgtcttcaaggaaacctttgtcccacggtgcttgcaggctaacagtccctctact
agcatgtggctagatctcttgatttcgttacttgatgatgaatgcttagcagaacagtgg
gctagcatcattatgcatgcaacaaattcggaagaactgaaatatgcggatgggattgtg
gactctgattgcctgtctctattggctatgctcattgaaaaagcaaaaatgagagctagc
aatagaagtactttgcaagttccctatgcagcctattggcatcatcatcttttggatttt
gctgccatttctgttgttcgagcttttccaccttttggaacttccaatgtttcatatatg
cgtgctgttctgggtggcatagcaagagatgatgaaacaaactttctgtcccaaaataca
ctagtactagtattaggggaggttcttaagaagttgacaattttcatgatggattctccc
ttcatatgggtcaaggacatgtgttcaatgatacttatcagagacaataacactgaactg
ggatttgaaccttctatggatgtgaatgagatggtcaattttgctttacaagtgcttgat
ggtggcttttctgcattgaaatgtttgcatcatgaagttgagctattttcgggaatcgta
gctgcattgtttgtaattaattgggaatgcaacatggctactgtcttcaatgatgaactt
ggtgaagaatccagagaaaaaataaagataaggttggcctcttgtgagctagtgcatgct
ctccatcgcaaaatttgcaatcagttcctatttactatcaacatagatagtcgaaagatc
ctagaaagcatcttggtccagactgtaaggagtgctgtgcttaaggatgaaaatttggat
gctgtgaaagtcacatctttatgttgtcactgggtccttgaacttcttgaatgtctctgt
caagatcagtttgagaagcaaaagctgttagacagattcctaagccaggatgattcatgg
cctgcttgggttgcaccagatatggaagacaggaaaggagcagatttggtgaaaactgag
agtgctccaattgataacccaagagtcaccaggtttgttgctctgatagacagacttata
cccaagataggttttgatataatcgtcgcaggtgctgtttctaatgtgtctccatcttca
actgaggatcctagtaatcaacctaccacaactcctcaatgtcattattcccgtgcctgg
ctggcagctgaaatcttatgcacttggaaatggaatggtggcaatgccttgtgctccttc
ttaccttatttttgtgaatatttgaatagtgagtgttatacgcccgaggatgagttgcta
gattctattgtcaccattttgctcgatggtgcacttgtttacgggggagttgcagaactg
agtctttcaaacttatctgctgttacaaacatggagagtattggagaacccttcctgaga
gctgttgtatcgttactgtctagacttttcgtagatgatgtatggggaaaggaaaaggca
gtatttctttttaatctgcttctgaataaactccatattggtgaaacaataaatataaac
tgtttaaggatacttccttcagttatgaacgtaatcattaggccgttgagtgttccattt
gacagagagagtgcaagcatgcagtctgcttctactgaatgttgtgaagtgcaagaggct
atcatggactggctccagcgaacacagtcttttccacccttaaatgcatggcaaacggga
gaagatatggcagattggttttaccttgttatatcctgctatcctgtacgaccaattgaa
ggagggaaagggttaagaccagaaagatatgtcagctctactgagagaatgctactgtta
gaattatttcagaagcagagaaagagttctgcattatctgtgataaacaagctgccggtt
gtgcagattttgttatcaaaagtaattctggttgcagttgcttattgctgggaagaattt
agtgaggatgactgggagttcgttctataccgttttaggtggtggattgaacgagcagtc
gttgtgatggaggaagttgctgagaatgtgaatgatgttattacaaatgcttctggttgt
gaacatttagaagttatgctgaaaagggtcaacgataccgtttcagtggaggactctact
ccaataaaactcgcaagcaatgctctaattggattttctttgttttgcaacataagtggt
ttcgaagcaaaaaaccctgctcctgatgtttctaatcgcttgaaaggtgacagatgggac
atggtcaaagaccgaattatagaaggtgttcttcggctgttcttttctactgccgctacc
caggcttcggcaagttcttatggtggtgaagcttcttcaattgtagcatcatctatcctt
gatcattctgagttctgggacttagtggcatcacttgttgtcgagtcctcttcaattgca
agagacaaggcagtaaaatcagttgaaatctggggcctaagtaaagggccagttagctct
ttatatgcaatgctgttttctgccgagacacttccttccctaaggtgtgctgcttatgtt
attctttcaactgaacctgtatctcagttggctttgtacactgtcgaaaagacaagttcc
tctggtggagatgctgacggttctactgaagaaagtcttcatcttagggcagaagtgtct
cccatgctggaaaaactaccatatgaagctcttcaaatggacttacttgcatttgaacgg
ataaaggtctttctagcttggtctttgttactttcacatgtggtgtcactaccatcatca
tcacccctaagggagagaatggttcaatacattcaagaatttgctacttcaacagtgtta
gattgccttttccagcatatccctttggaattttgtgtaccatcaagtttgaaaaagaag
gattcagaacttccagcttcagtttcagaagcagcgaaatctgcaactcgtgccattgct
tgtagttctgtgtcattttgcttggaatcgctttggcctgttggaccagaaaaagttgct
tcacttgctggtgcaatttttggcctcatgctctgtattcttcctgcttatgttcgtggg
tggtttagcaatatacgtgaccgttctacttcatctgccattgaatttttcaccagagca
tattgtagcccacctctgattatgaatgaactctctcagattaaaaaagccaattttgcg
gatgataatttctctgttactgtgagcaaatctgcttgtgaagtggtggctacctacaca
aaagatgaaacaggaatggacctaataatttgtcttccggcatcttacccactgcggcct
gtggatgtagattgtaccaagagccttggcatcagtgaggttaagcagagaaagtggtta
atgtcaatgatgtcatttcttcgtaatcagaatggtgccttagctgaagcaatttgcata
tggaagagcaattttgataaggaatttgaaggtgtcgaggagtgccccatatgttacagt
gtcattcacacttcaaatcatagccttccacggctagcttgcaaaacctgcaaacataag
ttccattcagcctgcctctataaatggttctctacttctcacaagtcaacttgtccattg
tgtcaatctcctttttga
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