Lycium barbarum (goji berry): 132635638
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Entry
132635638 CDS
T09483
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132635638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lbb03036
]
132635638
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
132635638
SWR1 complex
132635638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
Cas3-like_C
Motif
Other DBs
NCBI-GeneID:
132635638
NCBI-ProteinID:
XP_060208087
LinkDB
All DBs
Position
1:complement(60628599..60657104)
Genome browser
AA seq
2044 aa
AA seq
DB search
MYLELIMASKGYKSKPDHETRVRRQKGLEAPKEPQRLKTHWDHVLEEMVWLSKDFESERK
WKLAQARKVAIRASKGMLDQATRGEKRVKEEEQRLRKVALNISKDIKKFWLKIEKLVLYK
HQLELDEKKKKALDKQLEFLLGQTERYSTMLAENLVSSPSTCKQKNSLSAPEALRIQCKE
GSEGDVTNRDCVGENLQHSIGSDIDDDFGVQSEDEMEDDEHTIEEDEAVITKEEREEELA
ALQNEMDLPLEELLKRYAVGEASRDCSPEKSDADVTVSSGKGSDKCRDVDVATETDKGCT
PAISGRRSVESNGVFSVPNNHYSDLGKDKLKSPPKKYQELHRVNLLGDFNDEQDDDDYVL
AVGEDKGYNMDDETTLLEEEELAKAEANDAADEITLLQKESELPSDELLARYKEDFDTDE
NGGDDSESYASASDDLLESPAHNESEPSRVNDGLCDVMPTTVAEKEEKEVEGVDKTEEER
ESEDIIADAAAAARSAQPTGSTFSTTKVRTKFPFLLKFPLREYQHIGLDWLVTMYEKKLN
GILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLRWCPAFKILTY
FGSAKERKIKRQGWLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQR
WQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQ
EKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPSKHEHVIYCKLSRRQRNLYEDFIASSET
QATLASSNFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIHMHLSSTICSMLLPGIF
STVNLGALGLLFTHLDFSMTSWESNDVQSIATPSSLIEGRVSLIHGEETSQGLKRNKKFH
GTNIFEEIQKALAEERLREAKERAASIAWWNSIKCKRKPVYSTSIREIVTVKHPVHGIYC
QKSNPLSFLYSARLAESILSPVERFQKMVDQVETFMFAIPAARSPAPACWCSKPGTSVFF
SPTFKERCSEVLSPLLTPFRPAIVRRQVYFPDRRLIQFDCGKLQELAGLLRRLKSEGHRA
LIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEARQTLMQRFNTNPKIFLFILSTRSGG
VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQ
KRALDDLVIQRGSYNTEFFKKLDPMELFSGHRTVSLKNSEVEKNSNVTEVQLSNADVEAA
LQNVEDEADYMALKKVEEEEAVDNQEFTEEAIVRLEDDELGNDDETKADEPADHEALVTT
SSKELVAKANVSNPLKEQAITFAGKEDDIDMLADVKQMAAAAAAAGQAILSFEGQLRPID
RYAVRFLELWDPIIDKTAIESQGHFEETEWELDRIEKLKEDMEAEIDDDEEPLVYERWDA
DFATEVYRQQVETLAQHQLMKELEAEAKEKELAEYENSMGHTSSVPKTKSKKKAKKTKFK
SLKKGGLASERQALKEESSIELMPIDDDILSSEPVTTPDSAQERKRKPAIYDEDVKGAKK
SKKLKKSSEVSSLVHSTYYGKRQVESKELKQYDVGTMDIELRPISRSKMGGKISISPMPV
KRVLTIKSERPIRKGKTWSKDYVPSADSWLPQEDAVLCASVHEYGPHWSLVSDILYGVTA
GGAYRGRYRHPLHCSERFRELIQRYVLSAVDSVNDRSNNTGCMKGLLKVTEENVRLVLDI
ASEIPDHEPLVQKHFFALLSSVWKVQKSHTNTSSSTQNGFYHSGSLFTPIMNRVSTNCSM
GPPVKRFFNLSVCAKLVAAALSDQQSAQRDERVSIGDQREEASFPAEHLDITLEFGAEKD
DKTIPLPSPITVKILGPESPVSPRMTIADHHHFKSSQIMAENRFWAASSSEGCLDWASLA
FPIGDAKSRTPVKSQFLGKHKPSDSVKVSKSKSRKISIESSDVGRTKDLVLLPVPSVSND
SYPTADVGLSFLIESGNDFEDRTMLDLNSEFNAGSEDVFRHEYVPDFISGLDDWSVFPEF
TDIG
NT seq
6135 nt
NT seq
+upstream
nt +downstream
nt
atgtatcttgagcttatcatggcttctaaggggtataaatctaagccggaccatgaaaca
cgtgtccgacgtcaaaagggtcttgaagcacctaaagaacctcaacgtctaaaaacacac
tgggatcatgttcttgaggagatggtctggttgtcgaaggactttgaatcagagaggaag
tggaagttggctcaagcaaggaaggttgctatacgagctagcaagggaatgcttgatcag
gcgacacggggagaaaagagagttaaggaagaagagcaacgtctgcgtaaagttgcactc
aatatctcaaaggacatcaaaaaattttggttgaaaatagagaagctggttctttacaag
catcagttggagctagatgagaagaagaagaaagcacttgacaagcagctagagtttctt
cttggacaaacagaaaggtactcaacaatgctcgcggagaaccttgtaagttcaccaagt
acttgcaaacaaaagaattctttgtctgcaccagaagcattgagaatccagtgtaaagaa
gggagtgaaggggatgtaaccaatcgtgactgtgttggagaaaatcttcaacattcaatt
ggtagtgatattgatgacgactttggtgtgcaatctgaagacgaaatggaagatgacgag
catactattgaagaagatgaggctgttataactaaagaagaaagggaagaagagttagct
gccttacaaaatgaaatggatctacctcttgaagagcttcttaagcgttatgcagttggg
gaagctagcagagattgtagccccgagaagagtgatgcagatgttacagtcagttctggc
aagggcagcgataaatgtagagacgttgatgttgctactgagactgacaaaggctgcaca
cctgcaatttcgggtcgtcgttctgttgaaagtaacggcgtcttttcagttccaaataat
cattattctgacctagggaaagacaagctaaaaagtcctccaaagaagtatcaggagttg
cacagagttaatttgttaggtgactttaatgatgaacaggatgatgatgattatgtcctt
gctgttggtgaagataaaggatacaatatggatgatgaaacaactttgttagaggaggag
gagttggcaaaggcagaggcaaatgatgctgcagatgagattacactgttgcaaaaggag
agcgaacttccttcagatgagctccttgctaggtataaagaggattttgatactgatgaa
aatgggggggatgattctgaatcatatgcgtctgcttctgatgatcttttggaatcacca
gcacacaatgaatctgaacccagtcgagtaaatgatggactgtgtgatgtaatgcccact
acagttgctgagaaggaagaaaaggaagttgaaggtgtggataaaacagaggaagagagg
gagagtgaggatataattgctgatgcagcagctgctgccagatcagcacaaccaacgggt
agtaccttctcaacaaccaaagtgcggactaagttccccttccttctaaaatttcccctc
cgtgagtatcaacatattggtttggactggcttgtaaccatgtatgagaagaaacttaat
ggaatcctagcagatgaaatgggtttggggaagactatcatgacaattgctcttcttgct
cacctagcatgtgaaaaaggaatttggggccctcatcttattgttgtcccaactagtgtt
atgctaaactgggagactgagtttcttagatggtgtcctgctttcaaaatcttgacatat
tttggcagtgcaaaagagcgaaagattaaaaggcaaggctggttgaagccaaactcgttt
cacatatgtatcacaacttacagactcgttatacaagactccaaagttttcaagcgtaag
aagtggaaatacctgattttagatgaagctcatctaataaagaattggaaatcacaaaga
tggcagacgcttctgaattttaactcaaaacggcgtattcttttgactggtacgccattg
cagaatgatctcatggagctgtggtctctaatgcatttcttgatgccgcatatttttcaa
tctcatcaagaattcaaagattggttctgtaatcctatttctggaatggttgagggacaa
gaaaaggtaaataaggaagttgttgatcgcttgcataatgtccttcgtccctttattctc
cgccgtttgaaaagggatgtggagaagcagcttccttcaaaacatgagcacgttatttat
tgtaagctctcaaggaggcagcgtaacttgtatgaagactttattgctagttcggagaca
caagccactctagctagttcaaatttttttgggatgataagtgttataatgcaacttcgc
aaagtgtgcaatcatcctgacttatttgaaggacgtccaatagtgagctcttttgatatg
agtggtattcatatgcacttgagctctaccatttgctcgatgcttttgcctggtatattt
tcaaccgtcaaccttggagctttgggattgttgtttacacatcttgatttttcaatgacg
tcttgggagagtaatgatgttcaatccattgctaccccatcaagcttgattgagggtcgt
gtgtctctgattcatggtgaagaaacttcacaaggacttaaacggaataagaagtttcac
ggaacaaacatatttgaagagatccaaaaggcacttgctgaggagagactgagagaagca
aaggagagagcagcatctattgcatggtggaattccattaagtgtaagcggaaacctgta
tattctacaagtattcgggagattgttactgtgaaacatccagtccatggcatttactgt
caaaaaagtaatcccttgtcattcttgtactccgctaggcttgcggaatcaatactgtca
ccagttgagagattccaaaaaatggttgatcaggttgagacttttatgtttgcaatccct
gctgcacgttccccagcacctgcttgctggtgcagtaaaccaggaacttccgtatttttc
agtccgacctttaaggagagatgttctgaggttctttctcctcttctcactccttttcgt
ccagccattgttagaaggcaagtctactttccagataggcggcttatacaatttgactgt
ggaaagctgcaggagcttgcaggcttgttgaggcgattaaaatcagaaggtcaccgtgca
ttaattttcacccaaatgacaaagatgcttgatgttttagaagccttcattaatttgtat
gggtacacttacatgcgtctggatggttctactccgccagaagcgagacaaactttgatg
caacgtttcaacacgaatccaaagattttcctttttattttgtcaacccgtagtggtgga
gttggcatcaacttggtgggtgcagacacagtcatcttttatgatagtgactggaaccca
gctatggatcaacaagctcaagatcgctgtcatagaataggccagactcgtgaagtacac
atttaccggttgataagtgagagcacaattgaagagaatattttgaaaaaggcaaaccag
aagcgtgctctggatgatttggttatacagcgtggaagttacaacactgaattcttcaag
aagctggatccaatggaattgttctcaggccacagaacagtttccttaaagaatagtgaa
gtagagaagaatagcaatgtcactgaggttcagctttctaatgctgacgtggaggctgcg
ctgcaaaatgtagaagatgaggcagattacatggctctgaagaaagttgaagaggaagag
gcagtagacaatcaggagtttactgaagaagcaattgtcaggttggaagatgatgaactt
ggtaatgatgatgagacgaaggctgatgagcctgctgatcatgaagccctagttacaaca
tcaagtaaagaacttgtggcaaaggcaaatgttagcaatccattaaaagaacaagcaatt
acttttgctggtaaagaagatgacattgacatgctggccgatgtcaaacagatggcagca
gcagcagctgctgccggacaagctatcttgtctttcgagggtcagttacgtccaattgat
cggtatgctgttcgttttctggagttatgggaccctatcatagacaagacagctattgag
tcacaaggtcattttgaagaaactgaatgggaattggatagaattgaaaagttgaaggaa
gatatggaagcagagattgacgatgatgaagagcctttagtttacgagagatgggatgct
gattttgctactgaggtatacagacagcaggttgagactttggctcagcatcagttgatg
aaggaactggaagctgaagctaaagagaaagaacttgcagaatatgagaactccatgggg
catacatcttctgttccaaaaaccaagtcaaagaagaaggcaaagaaaacaaagttcaaa
tctttgaaaaaaggaggtttagcttctgaacgtcaagctttgaaggaagagtcttcgata
gagttgatgcccatagatgacgatattctatccagtgagccagttacgacgccggattct
gctcaagagagaaaacgtaaaccagcaatatatgatgaggatgtgaaaggcgccaagaag
tctaaaaagctgaagaagtcttctgaggtatcttctctggtacattcaacatattatgga
aagcggcaggttgaatctaaggaattgaagcagtatgatgttggcaccatggacatcgaa
ctcagaccaattagcagaagcaagatgggaggaaaaatctcaatcagtccaatgcctgta
aagcgagttcttactattaaatcagaaaggccgattaggaaaggtaaaacatggtctaaa
gattatgttccatcagctgattcatggttgccacaagaagatgctgtactttgtgcttct
gttcatgagtatggtcctcactggagcttggtgagtgatatcttgtatggagtgactgct
ggcggagcttatagaggaagatatcgtcaccctcttcattgctctgagaggtttagggaa
ctcatacagagatatgtgttatctgccgtagacagtgttaatgatagatccaacaatact
ggctgtatgaaaggtcttctcaaagtgactgaggaaaatgtccgactggtgttggatatt
gcatcagagatcccagatcatgagccgcttgttcaaaagcatttctttgcccttctttcc
tctgtgtggaaagtacagaaaagccacacaaatacatcctcatctacccagaatggattc
tatcattctggaagtttatttacaccaattatgaaccgtgtttcgacgaattgctcaatg
ggtccacctgtaaagaggttttttaatttaagtgtatgcgccaagttagtagcagctgct
ctctctgaccagcagagtgcacaaagggatgagagagtctccattggtgaccagagagaa
gaagcttcttttcctgctgagcatttggatattacactggaatttggggcagaaaaagat
gataagacaattcccttgccatctcccattactgtcaaaatacttggtcctgaatctcca
gtgtctccaagaatgacaatagctgaccatcatcatttcaagtcttcccagattatggct
gaaaaccgattctgggctgcatcaagtagtgaaggctgtttagattgggcttcccttgct
ttccctattggggatgccaagtcacgtactccagtgaaatcacaatttctggggaagcat
aagccctctgattcagtgaaggtttcgaaatctaagtccagaaagatttcaatcgaatct
agtgatgttggccggaccaaggatctagtgttgctgccagtgccatctgtatctaatgat
tcctatccaacagctgatgtgggattatcatttcttatagaaagtggaaatgattttgaa
gataggaccatgttagacctaaattcggaatttaatgcggggagtgaggatgtattccga
catgaatatgttcctgactttatatccggacttgatgattggtcagtgtttccggagttt
acagatattgggtag
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integrated database retrieval system
