Lycium barbarum (goji berry): 132635756
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Entry
132635756 CDS
T09483
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lbb03036
]
132635756
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
132635756
microRNA pathway
RISC loading complex
132635756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
SWI2_SNF2
dsrm
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
132635756
NCBI-ProteinID:
XP_060208248
LinkDB
All DBs
Position
4:complement(29688178..29714074)
Genome browser
AA seq
1654 aa
AA seq
DB search
MEDNQENPLKRNFQDFTSQVEKMDVQKNKKKKEEFIPREYQLEVFKVAMKRNTIAVLDTG
AGKTNIAVMMIREIGKTLRNADEKKFIVFLAPTVHLVHQQYEVIQNHTHLAVQEYYGAKG
VDEWTAESWKKETDDNDVLVMTPQILLDALRKGYIKFERVCFLILDECHRASGNHPYTRI
MMEFYHRSGKTSKVFGMTASPVIRKGVSSSTDCEEQISELESLLDSQTYALENRTELDEF
VPSAKETCKFYGPIVSSNTELKAKLEFSRSKFDAALAELQLLLPNHYKDTDDVYKKLQKR
LSNSCAKMVSCLENLGIICAYEAVKICLENVPDDKEENEILRKSSLQHRYFLEDALSIIQ
ESMPQDYESLLDIGYDSSATLSMGHISSKLHVLLEIFESLRKATQLRCLIFVERIITAKV
IERVLKKMTWFSHFTIAYVTGTNTSIDALTPKVQKETLESFRSGKVNLLFATDVVEEGID
VPHCSSVIRFDLPKTVRSYVQSRGRARQTESQYILMLERGNMKQREQMFNIIRSEYSMAD
TAIKRDPDSCVLKPCLVKETNAYYVEATGASVTADSSVSLLTKYCEMLPGDKFFSPKPMF
QYILSGDLYQCNLTLPPNAAFQTISGPQCRSTQLSRQLVCLDACKKLHQIGALNDHLLPF
NEKPPQSDSDVQQSKLGAGTTKLKELHGTACVSALSGTWGDSPNGEVYQVYKMDFPCNIM
EVKYSSFVLLLQSELDDDVGNVEVELFLVSKFVKSAVAHCGKVHLDAQQVAKAKIFQELF
FNGLFGKLFIKSSDGRKFLLETEETLWKPSNMYLLLPLDPLDSGCEPYRVDWGGIESSAS
VVEFLKRNAWLSAEKSEAKRQNSLVDRTASFEVQTDLIHFANISICRSKLKNMVVVAIHT
GRIYSVVDAVANSSSESPFEVNSEATGSPFSSYADYFHKKYGIVLVYPGQPMLLMKQSHN
AFNLLVDFKKEGISCGKEAKDRTRVVQKPQNNVHMPPELLVCIDIRIDILKSFYLLPSLM
HRLESLMLASQLRKEITSHSGDLHISSSLILEALTTLRCNESFSMERLELLGDSVLKYAV
SCHLFLKYPKKHEGQLTGQRSQAVSNSALHKLGTNQHLQSYIRDGAFDPGRWTAPGQLSI
RSCPCEHGVETPEVPLGKKFLTEAKVVVGKHCDRGHRWMGSKTISDCVEALIGAYYVGGG
FMAALKLMKWLGVKAELEPSLVEDAINTASLYSYTPKAKDIEDLELKLDYKFSVKGLLLE
AITHATVQELDVAYSYQRLEFLGDSVLDILITWYLYQKHKDIDPGELTDLRSASVNNDNF
AYAAVKRELHVHLQHRSGYLESEISSFVKSVSNSCSLQGNKAPKVLGDLVESIAGAILID
TKLNLDEVWKIFEPLLSPIVTPDKLELPPLRELIELCDSLGYFLKDRCVVNEDTVHAELR
LQLKDELLVAEGSAQTRKTAKGQAAMKLLKDLEKRGISSKKKKEETSLVDVPHSLGSDGD
ICSQVNTTSPEMPSRKKQKTICLDLKPDEAQSVQSDCSSSACYSNKNIQVIGPINMKRGG
PRISLFELCKKLQWPMPSFESVERKSKSLIECGEGPDKRKVYNTFASQISLTIPDYGLIE
LTGDERADKKSSLDSASLLMLYELERRGKIVIGK
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaatcaagaaaaccctttgaagagaaactttcaagattttactagtcaagtt
gaaaaaatggatgtacagaagaacaagaagaagaaagaggagtttattcctagagagtac
cagttggaggtatttaaagttgcaatgaaaaggaacaccattgctgttttggatactggg
gctggtaagacaaacatagctgtaatgatgatcagggaaattgggaaaacattgaggaat
gctgatgaaaagaagttcattgtgttcttggcacccactgttcatcttgttcatcagcaa
tatgaggttatacaaaatcacacacatcttgctgttcaagaatactatggggccaaagga
gtggatgaatggactgcagaatcctggaaaaaagaaactgatgataatgatgttttggtt
atgacaccccaaattttattggatgcactgagaaagggttacataaaatttgaaagagtg
tgctttctgatactagacgagtgtcatcgtgccagcggtaaccatccctatactaggatt
atgatggaattctatcatcgatccggaaaaacatcgaaggtttttgggatgaccgcttcc
cctgtgattagaaaaggcgtttcatcttcaacagactgcgaggagcaaatatcagaactt
gaaagtcttcttgattcccagacatatgcactggagaacaggactgagctggatgaattt
gttccctccgcaaaagagacttgtaaattctatggtccaatagtgtcttcaaatacagaa
ttaaaggcaaaattggaattctcaaggtcaaagtttgatgctgcattagctgaattgcaa
ctgttactgccaaatcactacaaagatacagatgatgtgtataagaagctccagaagaga
ttgtccaatagttgtgcaaagatggtgtcttgccttgaaaatctaggcatcatttgtgct
tatgaggctgttaaaatctgtttggaaaatgtccctgatgacaaagaggaaaatgagatt
cttaggaaaagctctctacaacatagatactttttggaggatgcattgtcaattatccag
gaatcaatgccacaagactatgagagtcttttggatattggatatgactcgtcagcaacc
ctgtcaatgggccatatatcttcaaaacttcatgtgcttcttgaaatttttgaatccctt
aggaaagctacacaactacgctgtctcatttttgttgaaagaattataacagcaaaagta
attgaaagagttctgaagaaaatgacctggttttcacatttcacaatagcatatgtgacg
ggaaccaacacatctatcgatgcactgacgccaaaagtgcaaaaagaaaccctggaatct
tttcgctctggaaaggtcaatttattatttgccactgatgtggttgaggaggggattgat
gtaccccactgctcctcggtaattcggtttgatctaccaaaaacagttcgtagttatgtg
caatctaggggacgagctcgtcagactgagtctcagtatatactaatgcttgagagggga
aacatgaagcagagggaacagatgtttaatatcattaggagtgaatattctatggctgat
acagctataaagagagatcctgattcttgtgtgctgaaaccttgtctagtgaaggaaact
aatgcctattatgtggaggcaactggagcatcagtaactgcagattccagtgtcagtctc
ttgactaaatactgtgaaatgctccctggagataagttcttctctccgaagccaatgttt
cagtacattttgtcgggggacttgtaccagtgtaatttgacactacctccaaatgcagcc
ttccaaacaattagtggtccacaatgcaggagtactcaattatcaagacagcttgtctgc
ttggatgcatgtaagaagctgcaccagataggtgctctcaacgatcatcttcttcctttc
aatgaaaagcctccccaaagtgattctgatgttcagcagagtaaattaggggcaggaaca
acaaagttgaaagaattacatgggacagcttgtgttagtgcgttatctgggacatgggga
gatagccctaatggagaagtatatcaggtgtataaaatggacttcccttgcaatatcatg
gaagtgaagtattccagttttgtccttttgcttcaatcagaactagatgatgatgtggga
aatgtggaagtggagctcttcttagtttccaagtttgtcaaatccgctgtggcacattgt
gggaaagtacacttggatgcccaacaggtggcaaaagcaaaaatcttccaagaactattc
tttaatggtttgtttggtaagttatttattaaatcatcggatggaaggaaatttctgctt
gagacagaagaaactttatggaagccatcgaacatgtacttgcttctaccgctggatcct
ttagattcaggttgtgaaccgtacagagttgattggggaggaattgaatcttccgcttca
gttgtggaatttttgaaaagaaacgcgtggttaagcgctgagaaatctgaagctaaacgg
cagaattccttagttgataggactgcatcatttgaggtacaaacagatttaattcacttc
gccaatatatcaatctgtagaagcaagcttaagaacatggttgttgtggccattcatacc
ggaagaatctactctgttgtggacgctgttgccaattcttcctcggagagccccttcgaa
gtaaattcagaagctactggatcacccttttcatcatatgctgactacttccataaaaag
tatgggattgttttagtgtatcctggacagcctatgctgctaatgaagcaaagccataac
gcattcaatcttctcgtagattttaaaaaagaaggcatatcatgtggaaaggaagcaaaa
gatagaacaagggtggttcaaaagccacaaaataatgtgcacatgccaccagaacttctg
gtctgtattgacattcggatagacatcttgaaatccttctacttgctaccgtcattaatg
caccgcctggagtccctgatgttggctagccagttgaggaaagagataacaagtcattca
ggcgacttacatatatcaagctcattgattctggaagctcttacaacgctaagatgcaat
gagagtttctccatggaacgtctggagttgcttggagactcagttctgaagtacgctgtt
agttgtcacctctttcttaaatatcccaagaagcatgaagggcagctaactggtcagcgt
tcacaggctgttagtaactcagccctccataaattgggaactaatcaacatttgcagagc
tatatacgggatggcgcatttgatccaggccgatggactgctcctggacagctttccata
cggagctgtccttgtgaacatggggttgaaactccagaagtgcctttgggcaagaaattt
ctgactgaagccaaagttgtagttgggaagcactgtgatagaggacataggtggatgggc
tcaaaaacaatatctgactgcgtggaagcactgataggtgcatattatgttggtggtggg
tttatggctgccctcaaattgatgaaatggcttggtgttaaagctgagcttgaaccttca
ttagtagaggatgcgatcaatactgcatctctttattcctatacccctaaagctaaagat
attgaagaccttgagttgaagcttgactacaaattttctgttaagggattgctactagaa
gctataacacatgctactgtgcaagagctggacgttgcttacagttatcagaggcttgaa
tttcttggcgactcagtactggacattctcattacctggtacctttaccagaagcataaa
gatattgatccgggggaactgacagatctgcgttctgcttctgtcaataatgataatttc
gcttatgctgctgtgaaaagagagcttcatgtccaccttcaacatcgttctggatatctt
gaaagtgaaatatcgtcatttgtgaagtcagtctctaattcttgttcactccaaggaaac
aaagccccaaaggtacttggagacttggtggagagtattgctggagctatacttattgat
actaagcttaatctggatgaagtttggaagatcttcgagccactattatctcccatcgtg
actcctgataagcttgaactacctccgttgcgtgagctcatagaattatgtgactcgctt
ggctacttcttgaaagaccggtgcgtggtgaatgaggatactgtgcacgcagagcttagg
ttacagctgaaagatgaactgctggtcgctgagggatctgcacaaactagaaaaactgcg
aaggggcaagcagctatgaagttgttgaaggacttagagaaaagaggaatttcatccaag
aagaaaaaagaagagaccagccttgttgatgtgccacattctttaggctctgatggtgac
atctgcagccaagtaaatactactagtcctgaaatgccttcacgcaaaaagcaaaagaca
atatgtttggatttaaagccagacgaagctcaatctgttcagagtgactgctccagcagt
gcctgttattcaaataagaacatccaagtaattgggccaatcaatatgaaaaggggtgga
cctcgcatatcactttttgaactttgcaagaagctgcagtggccaatgcctagttttgag
tcagtagagcgtaaatccaagtcacttattgaatgtggtgaaggccccgataaaaggaag
gtttacaacacttttgcatctcaaatctcgttgacaatacctgactatggtttaatagag
ctcaccggggatgaaagagctgataagaaaagttcacttgattcggcttcacttctcatg
ctgtatgagcttgaacgacggggaaaaatagtaattggaaagtaa
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integrated database retrieval system
