Lycium barbarum (goji berry): 132636080
Help
Entry
132636080 CDS
T09483
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132636080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132636080
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132636080
mRNA cycle factors
Common to processing body (P body) and stress granule
132636080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
132636080
NCBI-ProteinID:
XP_060208735
LinkDB
All DBs
Position
4:72225312..72232593
Genome browser
AA seq
991 aa
AA seq
DB search
MTTIPMDSNSDHSSRERVQRLYNKNAELEVKRRKAAQARVPSDPSAWQQMRENYETIILE
DHAFSEQHEIEYALWQLHYRRIEELRAHFNAAVNSSGSTNGKVPLISGPDRITKIRTQFK
TFLSEATGFYHDLMLKVRSKYGLPLGYSSDDPENQIPSSKDGNKSVEVKKGLISCHRCLI
YLGDLARYKGLYGEGDSKARDFAAASNYYLQAASLWPSSGNPHHQLAILASYSNDELVAI
YRYFRSLALESPFATARDNLIIAFEKNRQFYTQLLGDTKASSTKPLPPRTTGKGRGKGET
RQPMKDDKVEAISVQEKASSMSDIFKTFSTRFVRLNGILFTRTSLETFGEVQSVVKNDLL
ELLSSGPDEKNNFGSDAADCRLVIVRLVAILIFTVHNVNKEIENPSYAEILQRSVLLQNS
FIAVFEFMGHVVERCVQLNDPTTSFLLPGVLVFVEWLVCHHDVALGNEPEEKQTTARSFF
WKNCIAFFNKLLSSEFQFVDDDKDETCFFNMSRYDEGESGNRLALPEDFELRGFLPLLQA
QLILDFSRKHSFGGGGGIKEKKSRLQRIIAAGKALVSVVRVGEEGIYFDSKAKKFIIGIE
PQVSDDYAHCTMEVPKLSGIELENPAAGQLTVEALQPKQELYVECEEEDEVIVFKPSVAE
KHVNGSASNMMNSEVPVSCVGAAAKVPPGINITSAVLGNEMGPFSAAFDGLIMPSALHAS
ARPPPSIANNSGQYMQPMQPSTSMWSVEQGAVMNGLASLNLIGNGPTLKSELQGHSGVFP
PAPYSIPFPQSHNFSIANNFPLQFPDAAIPSDFSSLSSSVADIDSMSIKSPSVMSTGIKK
NPVSRPLRHLGPPPGFGSVPSKALDESSSAMTVKNEHTLLPPMDDYSWLDGYQLSSSHRS
IGFNNSINHSTQSVSKSSSLVGMVNFPFPGKQVNSLHVQAGNQKGREDYQISEQLKRHQE
QPQQLRSVNQRSVALPQQHQGQSQWECRFFV
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccattccaatggatagtaattcagatcattcgtcccgggagcgagttcagcgc
ctctacaacaagaatgctgagttggaggttaaacggagaaaagcagcacaagctagagtt
ccttctgatccaagtgcatggcaacaaatgcgagaaaactacgaaactatcatacttgag
gatcatgctttctcagaacaacatgaaatagagtatgccttgtggcagttgcattacagg
agaattgaggaattgcgggcacacttcaatgctgctgtaaattcaagtgggtcaaccaat
gggaaggttccccttattagtggaccagatcgcatcacaaagatccgaacacagtttaaa
acttttctttcagaagcaacaggcttttatcatgatttgatgctaaaagttaggtctaag
tatggtctgccactgggatattcctctgatgatccagagaatcagattccttcctcaaaa
gatggtaacaagtccgtggaggtgaaaaaaggattgatatcttgccatcgttgtttgatt
tatcttggtgatcttgctcggtacaaaggcttatatggtgagggtgattctaaagctcgt
gattttgctgctgcttcgaactattacctgcaagcggcttcactttggccttcaagtggc
aatcctcaccatcagctcgcaatactggcttcctattcgaatgatgagctggtggctatt
tatcgctattttcgcagtcttgcactagaaagcccttttgccaccgcaagggataacttg
atcattgcatttgaaaagaaccgtcagttttacacccagctgctgggggatactaaagct
tcctccaccaagccattgcctcctcgcacaactggaaaaggaagaggcaaaggagaaaca
aggcaaccgatgaaagacgataaggttgaagcaatctcagtccaggaaaaagcttctagt
atgtccgacatcttcaaaaccttcagcacgagatttgttcgattgaatggcattcttttc
actcgcactagcttggagacttttggagaagtgcagtcggtggttaagaatgatctgctt
gagcttctctcttctgggcctgatgagaagaataattttggttctgacgctgccgactgt
agactggttattgtgaggctcgtggctatcctaatattcactgttcataatgtgaataag
gaaattgaaaatccgtcatatgctgagattttacaaagatctgtacttctacagaattca
ttcattgctgtttttgagttcatgggtcatgtagttgagagatgtgtccaactaaatgat
cccacaacaagcttccttttgcctggtgttttggtgtttgtggagtggttggtgtgccat
cacgatgttgcacttggcaatgaaccagaagagaaacaaacgacagctagatcatttttc
tggaagaactgcattgctttctttaataagctactgtctagcgagttccagtttgttgat
gacgacaaggatgaaacatgctttttcaacatgagcaggtatgatgaaggagagagtggt
aatcgtctggcattgcctgaggatttcgaactgagaggatttttacctcttcttcaggca
caacttatccttgatttttcaaggaaacattcttttggtggtggtggtggcatcaaagag
aagaaatcacgtctccagaggataatagcagcaggaaaggctcttgttagtgtggtccgt
gttggagaagagggaatatattttgacagtaaggcaaagaaattcatcattggcattgag
ccccaagtatctgatgattatgcacattgcaccatggaagtacccaaactaagcggtatt
gagctggagaatccagctgcagggcagctaactgtagaagctctgcagccaaagcaagaa
ttgtatgtggagtgtgaggaagaagatgaagtaattgtctttaagccatctgtggcagaa
aagcatgtgaatggaagcgcgtcaaacatgatgaactcggaagttcctgtttcttgtgtt
ggtgctgctgccaaggttcctcctggcattaacataacctctgctgttctaggaaatgag
atgggccctttttcagctgcatttgatggattgatcatgccaagtgcattacatgcaagt
gcaaggccacccccaagtattgccaataacagtggccaatatatgcagcctatgcaacca
agtacttcaatgtggtctgttgaacagggtgctgttatgaatggattggccagcttgaac
ttgataggaaatggtccgactttaaaatctgagttgcaaggtcattcaggagtatttcca
cctgcaccatattctatcccttttccacagtctcacaattttagcatagcaaataatttc
cccctgcagtttccagatgctgctataccatctgacttcagttcactttcatcctcagta
gctgatattgacagcatgtcgattaagtctccatcagtcatgtcaacaggcataaagaaa
aatccagttagcagacctcttcggcatctgggtccacctccaggctttggttctgttcct
tccaaagcactggacgagtcttcatcagccatgactgtaaagaatgaacatactcttctt
cctcctatggatgactatagctggctggatggatatcagttgtcttcatcacatcggagc
attggtttcaataactccattaaccattcaacacaatccgtgagcaagagcagtagctta
gttgggatggtaaactttcctttccctgggaaacaggttaattctctgcatgtacaagcg
gggaaccagaaaggtcgggaagactaccagatatctgaacaattaaaacgccaccaggag
caacctcagcaactcaggagcgtaaatcaacggtctgttgcactgcctcagcagcatcaa
ggacagtctcagtgggaatgccgtttctttgtgtga
DBGET
integrated database retrieval system
