Lycium barbarum (goji berry): 132636088
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Entry
132636088 CDS
T09483
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132636088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132636088
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132636088
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132636088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
132636088
NCBI-ProteinID:
XP_060208746
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All DBs
Position
4:complement(73913305..73947303)
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AA seq
850 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELENQIDNFEAELEGLSVKKGKQRPPRLVHLETSIVRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSTLPLDKVES
LEDLVTVGPPGLVKGVTVASVVLSVKSSLASSPAQTSVSVTSSTQQAASVQDQADEAASQ
DSSSETVVRTPPPKSSAVAASAPTTPVGSHATQAAAALSPTSMSNAIKEDDLTSIPGRKP
SPVLSETPLRGVSRGALSNQPVASMALGSAGSVTGNGGVGAIPSASEVTKRNILVSEERL
GSSGMGQPLVSPLANRMMMSQAAKATDGTGVADGANLGDATVMTGRVFSPVGPGMQWRPG
SSFQNQNEAGQFRGRTEIAPDQREKFLQRFQQVQQQGQNNLLGVPPFSGGNLKQFSSQQQ
NSLLPQFNSQSSSVSPQLGLGVGAQGVGSNNIASSTSLQQQPVADAGHSKADELQQQQIL
PEDSSANAGLGKNLLNEDDMKASYGLDTPMQGVVTGSVAEASPRPRDTDLSPGQPLQSSQ
PSGSLGVIGRRSVADLGAIGDNLSASTANSGGMHDQLYSLQMLESAFYKLPQPKDSERAK
SYTPRHPAVSPPSYPQVQAPIVNNPAFWERLGADNYGTDTLFFAFYYQQNTYQQYLAAKE
LKKQSWRYHRKYNTWFQRHEEPTVATDDFEQGTYVYFDFHIANDEQHGWCQRIKQEFTFE
YNYLEDELIV
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtagaaagttacagggcgaaatagatcgagttttgaagaaagttcaagaa
ggcgttgatgtcttcgatagcatttggaacaaggtttatgacacggataatgccaaccag
aaggagaaatttgaagccgatttgaaaaaggaaataaaaaagcttcagcggtatagagac
caaatcaaaacatggattcaatccagcgaaatcaaagataaaaaggtaagtgcgtcatat
gagcaagcgttgatggatgctcgtaagcttattgagcgtgaaatggaacgattcaaagtc
tgtgagaaagaaactaagaccaaagcattttcaaaagaaggcttgggccaacaacctaag
acggacccaaaggagaaggctaagtcagagacaagagattggttgaataatgtggttggg
gagctcgaaaatcaaattgacaatttcgaggctgaattagaaggactctcagttaaaaaa
gggaagcaaaggcccccaagattggtacatttggaaacatccattgttcggcacaaggct
catataatgaagttagagttaattttaagattactggataatgatgaattgagtcctgag
caagtaaatgatgtcaaggatttcctcgatgattatgtggaacgtaatcaggaggatttt
gatgaattcagtgatgttgatgagctttatagcactttaccgctggataaggtggagtct
cttgaagatctggttaccgtcggtccacctggtcttgtcaagggtgtcactgttgccagt
gtggttttgagtgtgaaaagttctctggcctcttcacctgctcaaacatcggtgtctgta
acatcttcaacacagcaagctgctagtgttcaggatcaggctgatgaagcagcatcacag
gacagtagctctgaaacagttgtaaggacgccacctcctaaaagtagtgcagttgctgct
tctgctcccacaacgcctgttgggagtcatgcaactcaggctgctgctgctttatctcca
actagcatgtcaaatgcaataaaagaagatgatttgacgagcatcccaggtcgaaagcct
tcccctgtccttagcgaaactcctttaaggggtgtaagtagaggtgctctatctaaccaa
cccgtggctagtatggcacttggttctgctggttcagttactggcaatggaggtgtagga
gctattccttctgcttctgaagtcacaaagagaaatatcttagtttcggaggagaggctt
ggaagtagcggcatgggacagcctttggtatcccctctcgctaacagaatgatgatgtca
caagcagctaaggctacagatggaactggtgttgctgatggggcaaatctcggcgatgct
actgtcatgactggtagagttttctctcctgttggtcctggtatgcagtggaggcctggt
agttcctttcagaatcaaaatgaagcgggccaattccgtggaagaactgaaattgcccct
gaccagagggagaagtttttgcaacgatttcagcaagtacagcagcaaggtcagaataat
cttcttggcgtacctccatttagtggaggaaaccttaagcagttctcgtcccagcaacag
aattcacttttgccacagttcaattctcaaagctcctctgtctctcctcaacttggattg
ggagttggtgcccaaggagttggtagtaacaacattgcctcatctacatctttgcagcag
cagccagttgcagatgcgggtcactcaaaagctgatgagttgcagcaacaacagattttg
cctgaagattcttctgcaaatgctgggctcgggaaaaatcttttgaatgaggatgatatg
aaagcttcatacggattagataccccaatgcagggagtcgtcactggctctgttgctgaa
gcatcccctaggccaagggatacagatctatctcctgggcaacccttgcaatccagtcag
ccatctggaagccttggggttattggtcgaaggagtgttgctgaccttggagcaattggt
gataacctgagtgcatcgactgcaaattctggaggaatgcatgaccaattatacagcttg
cagatgcttgagtctgccttttacaaacttcctcaacccaaagattctgaacgtgcaaag
agctatacaccgaggcaccctgcagttagccctccaagctatccccaagtacaagctccc
attgtcaataatcctgccttctgggaaagacttggagctgataactatggcactgacact
ctgttctttgcattttattaccaacagaacacttaccagcagtatctggctgctaaggag
ttaaagaaacagtcttggaggtaccacagaaaatataacacatggtttcagcggcatgag
gagcctactgttgccactgatgactttgaacagggcacatatgtgtactttgatttccac
atcgccaatgatgaacaacatggatggtgtcagaggatcaagcaggagttcacatttgaa
tacaattatcttgaagatgagctcattgtatag
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