Lycium barbarum (goji berry): 132636226
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Entry
132636226 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03013
Nucleocytoplasmic transport
lbb03015
mRNA surveillance pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132636226
09122 Translation
03013 Nucleocytoplasmic transport
132636226
03015 mRNA surveillance pathway
132636226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132636226
03041 Spliceosome [BR:
lbb03041
]
132636226
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132636226
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132636226
Spliceosome [BR:
lbb03041
]
Complex C
Other components
EJC/TREX
132636226
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132636226
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
132636226
NCBI-ProteinID:
XP_060208952
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All DBs
Position
4:complement(109940591..109951379)
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AA seq
427 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKIPDSGTKVNGESAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILAL
ARDKELSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaacaaggagaacgatgcttatgaagaggagcttctagactatgaagaagat
gatgaaaaaatccctgattccggtactaaagtcaatggcgagtcggccaaaaagggttat
gttgggattcacagttcaggtttcagagactttcttctaaagccagagctattacgggct
attgtggattctgggtttgagcatccttccgaagtgcaacatgagtgcattccacaagct
attctgggaatggatgttatttgccaagctaaatctggaatgggcaaaactgctgttttt
gttctttcaactctgcaacagattgaacctgtcgctggtcaggttgctgccctggttcta
tgtcacactagggaattagcttatcagatttgtcatgagtttgagaggttcagcacttat
ctgcccgatattaaggttgctgttttctatggtggtgtcaatatcaaactccataaggag
cttctgaagaatgaatgccctcatattgttgttggaactcctggaagaatacttgcattg
gcaagagataaggaactctctttgaggaatgtgaggcattttatactagatgaatgtgac
aagatgcttgaatcacttgacatgaggagagacgtgcaggaaatcttcaagatgactcct
catgacaagcaagtcatgatgttttctgcaaccctcagcaaggagattcgcccggtttgc
aagaaattcatgcaagatccaatggaaatttatgtcgacgatgaggccaagttgaccctg
catggacttgtacagcactacatcaaattgagtgaaacggagaaaaaccggaagctgaat
gacctgttggatgctttggacttcaaccaagttgttatttttgtcaagagtgtgagcaga
gcagcagagttgaacaagttacttgtggagtgtaattttccatctatctgcatccactct
ggcatgagtcaggaagaaagactgacgcgctacaagggattcaaggaagggcataagaga
attcttgtggctactgatttggttgggagaggcatagacattgaaagggtgaacattgtt
attaactatgacatgccagattctgcagacacttaccttcacagagtgggaagagctggt
aggtttggaactaaagggcttgccataacatttgtgtcatctgcatcagattctgaagtt
ctcaatcaggttcaggagaggtttgaagtggatattaaagagcttcctgagcagattgat
acttctacatacatgccatcttag
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