Lycium barbarum (goji berry): 132636263
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Entry
132636263 CDS
T09483
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132636263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132636263
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132636263
mRNA degradation factors
5'-3' decay
Decapping complex
132636263
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
132636263
NCBI-ProteinID:
XP_060209016
LinkDB
All DBs
Position
4:116166472..116177518
Genome browser
AA seq
814 aa
AA seq
DB search
MDGFEGGGSRLMEFGDNRSAAEQEKFDASQYAFFGNDVVEEVELGGLEDEEDDLPPVGFD
DEEFQLEREEGEALGSLSEIDDLSSTFSKFNKDDGGAIKPGFIGDREYRESSSAVEWSQD
ADFRNWIDRKALDGGESTDSKRWPSQPYSSAAHLLESKTLYRTSSYPEQQQHHEYQQQIP
NHHYSSEPALIPELPFTSFPPSARHPQANPNNQLRDPNGPNHPGGQQMPVSSPNFSPFLN
AANHLTASHLGPQYGGKFAQGAPPGLPLHNQIPSQWLKQSTLYPGEQSSLTSNMMPQQSH
RQNGFAPPHGGPQQPQQLGQHHPLHSPYGHLPGLQSQPFNHHMSPPSQMNNFDMLGLADL
RDQKAKLMLRGRQGPHYSQLGFDVNSQRNVSAWPRFRSKYMTTDELENILRAQLAATHSN
DPYVDDYYHQACLAKKSAGAKLKHHFCPNNLRDGSARTRANNDPHPFLQVDALGRVAFSS
IRRPRPLLEVDPPKSSATGSVEQKMPEKPLEQEPMLAARVAIEDGLCLLLDVDDIDRFLQ
FNQLPDGGDQLKRRRQVLLEDLASSLQLVDPLGRSGHSVNLAAKDDVVFLRIVSLPKGRK
LLVRYLELLFPGSELTRVVCMAIFRHLRFFFGGPPSDQRATETIVNLGRTVSLCICEMEL
KALAACLASVVCSVEPPPLRPIGSPAGDGASVVLKSILERATEILRDPHAAAKCSMPNRA
FWQASFDAFFGLLTKYCFSKYDTVMQCFLTQAPPGVAVSGSDAAKAISKEMPVELLRASL
PHTSEQQKKVLLEFAHRSMPVLGVGSQSGGSGST
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggacggatttgaaggcggaggtagccgccttatggaatttggtgacaaccgctctgca
gcagaacaagagaaatttgatgcttcacaatatgcattctttggtaacgacgttgttgaa
gaagttgaactgggtgggttggaagatgaagaggacgatcttcctccggttgggtttgat
gatgaagagtttcaattagaacgagaagagggtgaagctcttggatctttatctgagatt
gatgaccttagtagcacattttccaagtttaacaaggatgatggtggcgctataaagcca
ggatttattggtgacagggaatacagagagagctcatcagctgttgagtggtcacaagat
gcagattttcgtaattggattgaccggaaagctcttgatgggggtgaaagcactgacagc
aaaaggtggccatcacagccatactcttctgctgctcaccttttggaatcaaagactttg
tacaggacttcctcataccctgagcaacaacaacatcatgaatatcaacagcaaatcccg
aaccaccactactccagtgaaccggcactcatcccagaattgcctttcacttcatttcct
cctagtgcgagacatccacaagctaatccaaataaccagttacgggacccaaatggtcca
aatcatcccggtggacagcaaatgccagtttcctcacctaacttttctcccttcttaaac
gctgcaaatcacttaacagcctcacatctgggcccacagtatggtggaaagtttgctcag
ggcgcacctcccgggcttccccttcataatcaaattccaagccaatggttgaagcagtct
actttgtatcctggggagcaatcaagcctgaccagtaatatgatgccccagcagtcgcat
cgccaaaatggtttcgcgccgccacatggggggccgcagcaaccccagcagcttggacaa
catcatcccttgcattcaccctatggccatttgccagggttgcaatcccaaccgtttaat
caccatatgtctccaccctcacagatgaataattttgatatgcttgggttggctgattta
agagatcaaaaggccaaactaatgctgagaggcagacagggccctcactactctcaacta
ggctttgacgttaatagccagagaaatgttagtgcatggccaagatttagatccaagtac
atgacaacagatgaattagagaatattcttagagcgcagctggctgctacccatagcaat
gatccttatgttgatgattattatcaccaagcttgtctggccaaaaagtctgctggtgca
aagttgaagcaccatttctgcccaaataatttgagggacggtagtgctcgaactcgtgct
aataatgatccgcatccttttctccaggttgatgctcttggaagggttgctttctcttct
attcgcaggccccgcccgcttcttgaagttgatccaccaaaatcatctgctactggatcc
gttgaacagaaaatgcctgagaaacccctggagcaagagccaatgctagcagctagggtg
gctatcgaggatggactctgtcttcttcttgacgttgatgatattgaccggttcttacaa
tttaaccagcttccagatgggggagaccagttgaaacgcaggcggcaggttctgcttgag
gatttggcatcgtcacttcagctagttgaccccctcggcagaagtggccactctgtgaat
ttggctgctaaagatgatgttgtcttcttgagaatcgtctcacttcccaagggccggaag
ctgctagtacggtacctggagcttcttttccctggaagtgaactgaccagggtggtttgc
atggctattttccgtcatctaaggttcttttttggtgggcctccaagtgatcaacgggca
actgagactattgtgaaccttggaaggaccgtgtcactgtgtatttgtgagatggagctc
aaagcacttgctgcctgtcttgcatcagtggtttgttctgtagagcctcctccgcttcgt
cccattggaagccctgctggagatggggcatctgttgttctaaaatctattcttgagagg
gcgactgagatattaagagatccccatgctgctgccaagtgcagcatgcctaatagggca
ttctggcaggcctccttcgatgcattttttgggttactcacaaaatactgtttcagcaaa
tatgacactgtaatgcaatgtttcttgacacaagccccaccaggtgtggctgttagtgga
tccgatgcagccaaagctatcagtaaggagatgcctgttgaacttttgcgtgcgagtctt
cctcacactagtgaacaacagaaaaaggtcctcttagaatttgcacataggtccatgcct
gtgctaggagttggtagccaaagtgggggaagtggtagcacatga
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