Lycium barbarum (goji berry): 132636280
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Entry
132636280 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132636280
03041 Spliceosome [BR:
lbb03041
]
132636280
03036 Chromosome and associated proteins [BR:
lbb03036
]
132636280
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132636280
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132636280
mRNA cycle factors
Common to processing body (P body) and stress granule
132636280
Spliceosome [BR:
lbb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132636280
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
132636280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
132636280
NCBI-ProteinID:
XP_060209047
LinkDB
All DBs
Position
1:91572780..91583468
Genome browser
AA seq
597 aa
AA seq
DB search
MSNSWADSVENNVATDNVGPSGASASTRRSSYVPPHLRNKPIAAEPPLAPSQGGPPSGGF
NGPTRWGGSYGRQGGGGGRGGGWGGRGGGWGRDREVNPFGNDADVVLEQSFDQENTGINF
DAYEDIPVETSGENVPPPVNTFADIDLGDAVNLNIRRCKYVKPTPVQRYAIPISIAGRDL
MACAQTGSGKTAAFCFPIISGIMRGNFPQRPRGVRTVFPLALILSPTRELSMQIHEEAKK
FSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAKVSLQMIRYLALDE
ADRMLDMGFEPQIRRIVEQMDMPPPGKRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV
GSSTDLIVQRVEFVHDGDKRSHLMDLLHAQMANGVHSKQSLTLVFVETKKGADALEHWLC
INGFPATAIHGDRTQQEREQALRTFKRGDTPILVATDVAARGLDIPHVSHVINFDLPNDI
DDYVHRIGRTGRAGKSGLATAFFNDGNLSMAKPLADLMQEANQEVPEWLTRYASRSYGGR
NRRAGGGRFGGRDFRRDSSYNRSGGGGVNYYDGGNSSSGGYGNYSGGYGPGVTSAWD
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagcaactcttgggcagattcagttgagaataatgtagctactgataatgttgggcct
agtggtgcttctgcttctacaaggagatcatcttatgtcccaccacatcttcgcaacaaa
ccaatagcagcagaacctcctctagctccatcgcagggtggcccaccttctggaggtttt
aatggaccaactagatggggtggttcttacggacgccaaggtggaggcggcggccgcgga
ggtggttggggtggcagagggggtggttggggtagagaccgggaagttaaccctttcggt
aatgatgcagatgtggtcttggagcaatcatttgatcaggagaatactggtatcaatttt
gacgcttatgaggatattccagtggaaacaagtggagaaaatgtgccacctcctgttaat
acatttgcagacatagatttaggggatgctgttaacttgaatattaggaggtgcaagtat
gttaagcccactcctgtccagcgatatgcaattcctatctccatagcaggacgagatctc
atggcctgtgcccagactggatccggcaagactgctgccttttgtttcccaattattagt
ggaatcatgagggggaattttcctcaacggcctcgtggagtccgcacagtttttcccctt
gctcttattctgtctccaacaagagagctctcaatgcagatacacgaggaagctaaaaag
ttttcttatcagactggtgttcgggtggtagtggcctacggtggagccccgattaatcaa
cagctccgagagcttgagagaggagttgatattcttgtggcaactcctggtagactggtt
gatttacttgagagagcaaaagtttcattacagatgattaggtatttagctctcgatgag
gcagatcgtatgctggacatgggattcgagcctcaaatcagaaggatagtggagcaaatg
gatatgcctccacctggtaaaagacagactatgttgttcagtgccacattcccaaaagag
attcagagactggcatctgattttcttgcaaactacatatttttggcagttggacgagtt
ggttctagtactgatttgattgttcagcgagttgaatttgttcatgatggtgacaagaga
agccatcttatggacctacttcatgcacagatggctaatggggtacacagcaagcaatct
ctaactttggtatttgtcgaaacaaagaagggtgctgatgcattggagcattggctgtgt
attaatgggtttcctgcaactgccattcatggtgataggactcagcaggaaagggagcaa
gcgttgagaacattcaagagaggagataccccaatattagtagcgacagatgtggctgct
cgaggccttgatatccctcatgtttctcatgttatcaactttgaccttcctaatgacatt
gatgattatgtgcaccggataggcaggacaggtcgtgcaggcaagtcaggattagcaact
gctttctttaatgacggcaatctttcgatggccaaaccgctagctgacttgatgcaagaa
gctaatcaggaggtacctgaatggttgactcgttatgcgagccgttcatacggaggtaga
aacaggcgggctggcggaggccgttttggcgggcgtgacttcaggagggattcctcatac
aatcgaagtggaggtggtggtgtgaattactatgatggaggtaatagtagtagtggtggt
tatggcaattatagtgggggatatggtcctggagtaactagtgcttgggattag
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