Lycium barbarum (goji berry): 132636310
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Entry
132636310 CDS
T09483
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00100
Steroid biosynthesis
lbb00909
Sesquiterpenoid and triterpenoid biosynthesis
lbb01100
Metabolic pathways
lbb01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
132636310
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
132636310
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lbb01006
]
132636310
Enzymes [BR:
lbb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
132636310
Prenyltransferases [BR:
lbb01006
]
Terpene biosynthesis
Squalene/phytoene synthase
132636310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
132636310
NCBI-ProteinID:
XP_060209108
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All DBs
Position
1:complement(98946202..98961996)
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AA seq
452 aa
AA seq
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MMGEIVRHPNELYPLMKLLVIAKRAEKETPSQPHLRYCYLMLRKISRSFSLVIQQLPLQL
RDVVCVFYLVLRALDTVEDDTSIATQVKVPILIAFHRHIYDHEWHFSCGINAYKDLMDQF
HHVSSAFLGLGKNYQEVIEDITMRMGEGMAKFVNKEIETIDDYEEYCHYVAGLAGLGLSK
LFHASGKEDLAPDSLPNAVGLFLQKTNIIRDYLEDINEVPKCRMYWPRQIWSKYVYKLED
LKLEENSVKAVQCLNDMVTNALSHVEDCLVCLSTLRDPAIFRSCAIPQDLKLEENSVKAV
QCLNDMVTNALSHVEDCLVCVSTLRDPAIFRSCAIPQVMAIGTLAMCYENIKVFRGVVKM
RRGLSAKVFDQTRTMADVYDAFSHFSCILKSKVDNNDPNATNTLKRIEAIMRTCSDSGTL
YKRNKPNYIPTLAVVFFVIVAILLPYLSAKRT
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaaatagtgaggcatccgaatgagttatacccattgatgaagctgttagta
atagcaaaacgagcagaaaaagagactccttcacagccacacttgagatattgctatttg
atgctccgcaagatttctcgcagtttctctctcgtcattcaacagcttcccctccagctc
cgtgacgttgtatgcgtattctatttggttcttcgagcacttgacactgttgaggatgat
accagcatagcgacacaggtcaaagtacctattctcatagcttttcatcgtcacatttat
gatcatgaatggcatttttcatgtggtataaatgcctacaaggatctcatggaccaattc
catcatgtttcttctgcttttctggggcttggaaaaaattatcaggaggtgattgaggat
attacaatgaggatgggtgaaggaatggctaaatttgtaaacaaggagattgaaacaatt
gatgattacgaggaatattgtcactatgtagctgggcttgcaggattaggcttgtcaaaa
cttttccatgcctctggtaaagaagatttagctccagattctcttcccaatgccgtgggc
ttatttcttcagaaaacaaatatcattagagattatttggaggacataaatgaagtaccc
aagtgtcgtatgtattggccccgtcaaatttggagtaaatatgtttacaaacttgaggac
ttgaagctcgaagaaaattcggtcaaggcagtacaatgtctcaatgacatggtcactaat
gctttatcacatgtggaagattgtcttgtttgcctatccactttacgtgatccagctata
tttcgatcctgtgctattccacaggacttgaagctcgaagaaaattcggtcaaggcagta
caatgtctcaatgacatggtcactaatgctttatcacatgtggaagattgtcttgtttgc
gtatccactttacgtgatccagctatatttcgatcctgtgctattccacaggtcatggct
attgggacattggcaatgtgctacgagaatatcaaagtcttcagaggtgttgtaaaaatg
agacgaggactcagtgctaaggtttttgaccagaccaggacaatggccgatgtctacgat
gctttttcacatttttcttgtattctgaaatccaaggttgataataacgatccaaatgca
acaaatactttgaagcggattgaagcaattatgagaacttgcagtgactctggaaccttg
tataaaaggaacaagcctaactacataccaactttggctgttgtatttttcgtcatagtg
gctattcttcttccctatctgtctgcaaaaagaacttag
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