Lycium barbarum (goji berry): 132636711
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Entry
132636711 CDS
T09483
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132636711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132636711
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132636711
mRNA degradation factors
5'-3' decay
Decapping complex
132636711
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
FAS_I_H
Motif
Other DBs
NCBI-GeneID:
132636711
NCBI-ProteinID:
XP_060209691
LinkDB
All DBs
Position
4:complement(141553170..141560939)
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AA seq
802 aa
AA seq
DB search
MDRSDGKSSMDLSNSSSSISDGALFDASQYAFFGRETGEEVELGGLEEEGNSFVPVVDGG
LGDDDTHEYHLFEKDEGSASDVDDLATIFSKLNRNVAGPRHPGIIGDRGSGSFSRESSSA
AEWARETDFPDCFDQYLSDTECYQESKRWSSQTHFSPAHLSESKPLYRTSSYPEQQQQLQ
RFSSEPILVPKSSFTSLPPPTGRSQQALPYSLSHHQSMPSQSPYSTSNLSTLSNPNIHLA
GLSHGPQYGGNIPQWSPPGLSLDTRLQNHWNSHASLSHGDYSRLLNSISPHQFPQNGLLS
PLLMSHRQLQQQRLHHSVQPSLAHFSALPSQFNSFPSPAHLGKHADFRDSKSKSSHKGRQ
NVRFSKLGSEVGSQKSENNVPKFRSKYMTGDEIESILKMQHPASHGNDPYADDYYHQARL
AKKAAECRSKHRFCPNKEQPSRSRNNSTDLQPHLHVDAKGQISFSSIRRPRPLLEYDPPG
FVCNGSGDQKMSEKPLEQEPMLAARITIEDGFYLLLEVDDIDRLLQFSQPQDGGVQLRRK
RQVLLEGMAASLQLVDPLAKSGGSVGLTPKDDIVFLWLVSLPKGRKLISRYLQLLVPGGE
LARIVCMAIFRHLRFLFGGLPPDPEAGETITSLAKTVSACTSGMDLNLLSACLAAVVCSS
EQPPLRPLGSPAGDGASVILKSVLERATYLLTDPQAVTSFSMPNPALWQASFDAFFGLLT
KYCLSKYDSIMQSKSNTEMIGSEAARAVSREMPVELLRASLPHTNEHQRKLLMNFAQRSM
PVTGYNAHGESSGQINPESVSC
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatagatctgatggtaaaagttccatggatttgtccaattcttccagctctatctca
gatggtgcactcttcgatgcatcacagtatgcattttttggacgagaaacaggagaggaa
gttgaattggggggtctagaggaagaaggaaacagttttgttcccgtggtggatggtgga
cttggtgatgatgatacacatgagtaccatttgtttgaaaaagatgagggatcagcttct
gacgtagatgatctggctactatattttcaaagttgaacagaaatgtcgcaggacctagg
catccgggaattattggagatcgcggatccggatctttctcaagggaaagttcatcggca
gctgaatgggcaagggaaactgattttcctgattgttttgatcagtatttgtctgacact
gaatgttaccaggagagcaaaagatggtcttcacagactcatttctctcctgcacatctg
tcagagtcaaaaccgttgtatagaacatcctcatatcccgagcaacaacaacaacttcag
cgcttttcaagcgaacccattttagtgccaaagtcatctttcacttctctccctcctccg
actggcagatctcaacaagccttaccatacagcctgtcacatcatcaaagcatgccatct
cagtctccctattcaacatccaatctatccactttatcaaatcctaatatccatttagca
ggtttgtctcatgggccccagtacggtggaaacataccacagtggtcacctcctggtctt
tctctcgatacccggctgcaaaaccactggaatagtcatgcgagtctcagtcatggggat
tattctagactcttaaatagtatatctccacatcagtttccacagaatggtttattgtcc
cctctgttaatgtcccaccggcagctgcagcagcaaagattgcatcattcagttcaacca
tctttagctcatttttctgcactgccttcccagtttaattcctttccttcacctgcccat
ctgggtaagcatgctgattttagagattcaaaatccaagtcgtcacataaaggtagacag
aatgtgcgcttctctaaactaggctctgaagtcggtagccaaaaaagtgagaataatgtt
cccaagttcagatctaagtacatgactggtgatgaaatagagagcatcctgaaaatgcag
catcctgcatcacatggcaatgatccatatgcagacgactattatcaccaagctcgcctt
gcaaagaaagcagctgagtgtaggtcaaaacatcgtttttgtccaaacaaggagcaacct
tcacgatcacgtaataatagtacagacttacagcctcacctccatgttgatgctaagggg
cagatttcattttcgtccatccgcaggcctcgtcctcttcttgaatatgatccaccagga
tttgtatgtaatggcagtggtgatcagaagatgtctgagaaacctttggagcaggaacca
atgcttgctgctagaattacaatagaggatggtttctatcttctccttgaggttgatgac
attgataggctacttcagtttagtcagccgcaagatggtggtgtccagctgaggcggaag
agacaggttctgttggaaggcatggctgcctcacttcagcttgttgacccgcttgcaaaa
agtggcggttcagttgggctgacccctaaagatgacattgtgttcttatggttggtgtct
cttccaaaaggccggaagctcatttcaaggtatcttcagcttcttgtacctggtggcgag
cttgcaagaatagtttgcatggcaatttttcgccatttaaggtttttatttggtggcctt
ccacctgatccagaagccggtgagacaatcactagtcttgcaaaaacagtctctgcatgt
acaagtggcatggaccttaatttgcttagtgcttgtttagctgccgttgtttgttcctca
gagcagccacctcttcgtcctcttggaagccctgctggagatggagcctctgttattctt
aaatctgttcttgaaagggcaacctatctcttaactgatcctcaggctgttaccagcttc
agcatgcctaatcctgccctttggcaggcatcttttgatgccttttttggtttactcacc
aagtattgtctgagtaaatatgactccataatgcaatcaaagtcaaacacagaaatgatt
ggttcagaagctgcaagagctgtaagcagagaaatgccagtcgaacttttacgtgctagt
ctcccgcacacaaatgagcaccaaaggaagctgttgatgaattttgctcagaggtccatg
cctgtaactggatacaatgctcatggtgaaagcagtggacagataaatcctgaatctgta
agctgttag
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