Lycium barbarum (goji berry): 132638646
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Entry
132638646 CDS
T09483
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03020
RNA polymerase
lbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132638646
09124 Replication and repair
03420 Nucleotide excision repair
132638646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132638646
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132638646
Enzymes [BR:
lbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132638646
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132638646
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132638646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
132638646
NCBI-ProteinID:
XP_060211438
LinkDB
All DBs
Position
4:complement(135343879..135352202)
Genome browser
AA seq
1198 aa
AA seq
DB search
MYGESEYVDENVDDREIMSVDDDEDEAQEITQDDAWAVISAYFEEKGLVRQQLDSFDEFI
QNTMQEIVDETADIEIRPESQHNPGRQPDFVETIYKIKFTQIYLSRPMMTESDGETNTLF
PKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYN
LSEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSI
AEGQNKAPSGMFVRMLSRSNSKGASGQYIRATLPYIRAEIPIIVVFRALGFVADKDILAH
ICYDSADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGFSRERRIKYAKEILQREM
LPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYGNKRLDLAGPLLGGLFRML
FRKLTRDVRSYVQKCVDSGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ
VLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLAL
MVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLR
QLRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVEKKKLIIKKKDIVALQMRESS
EDSGWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRLNPDEAYSETYTHCEIHPSLIL
GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
EHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
VKEDFGRPDREHTMGMRHGNYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQPAR
YTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIG
MTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHMGKEGDATPFTDVT
VDSISKALHKCGYQMRGFERMYNGHTGRILTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV
QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGLMAI
ANLKKISFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKEPKPSSGKRAS
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgtatggagagagtgaatacgtagatgaaaatgttgatgatagagagataatgtcagtt
gatgatgacgaagatgaagcacaagagataactcaggacgatgcatgggcagttattagt
gcatattttgaagagaagggacttgtgaggcaacaattggattcgttcgatgagttcata
cagaatacaatgcaagaaattgttgatgaaactgctgatatcgaaatccgtcctgaatcc
caacataatcctggtcgtcaacctgatttcgttgagacaatttataagatcaagtttact
cagatatacttgagtagacctatgatgacagagtctgatggagagactaatactttgttt
ccaaaggctgcaaggttaaggaacttaacgtactcttctcccctatatgttgatgtgaag
aaggaagtaataaagaaaggtcatgactatgaggaagtcactgagaatcaggaatttacc
aaggttttcattggaaaggttcctataatgcttcgatcaagctactgcagcttgtataat
ctatcagagaaagatttgactgagttgggagagtgtccctatgatcaaggtggatacttc
atagtcaatgggagtgagaaagttctgattgcacaggagaaaatgagcagtaatcatgtc
tatgtattcaagaaaagacaaccaaacaagtatgcttatgtggcagaagttcggtctata
gccgagggccaaaacaaggcacctagcggcatgtttgttaggatgctttctaggtctaat
agtaagggggcctctgggcaatatatccgtgccactcttccatacatacgggctgaaatt
ccaattatagttgtcttcagggcattaggatttgtcgcagacaaggatatattggcacat
atttgttatgattctgctgacacacaaatgatggaattgcttcgcccttccttggaagaa
gcttttgtgattcaaaatcagcaggttgcacttgactatattggcaaaagaggatctact
gttggtttctcaagagaaaggagaatcaagtatgccaaagagattctccaaagggaaatg
cttccgcatgttggtactagagagtattgtgaaactaagaaggcctactattttggctat
atcatccatcggcttttactctgtgtactgggacggaggcctgaagatgatagggatcat
tatggaaataaaagactggatcttgctggacctttacttggtggcttattccgaatgcta
ttcaggaagctaacaagggacgtgagatcctatgttcaaaagtgtgttgacagtggaaag
gatgtgaatttgcaatttgcaattaaagcaaaaacaattacaagtgggcttaagtattct
cttgctactgggaactggggtcaggcaaatgctgctggtaccagggcaggagtttcacag
gttttgaaccgtttgacatttgcatctactctttctcacttgcgtagattgaactcgcca
atagggcgagagggtaaattggcaaaacctagacagcttcataattctcattggggaatg
atgtgtccagcagaaacgcctgagggacaagcatgtggactggtaaagaaccttgcttta
atggtgtacataacagtaggatcagcagcaaatccaattttggagtttctagaggagtgg
agtacagaaaattttgaggaaatatctcccgcggttattccccaatctaccaaaattttt
gtaaatggttgttgggttggcattcatcgtaatccagatctgttggttaagacactgaga
cagttgaggagacaggttgatgttaatactgaagttggagttgtccgcaatataaattta
aaggaactgcgactatatacagattatggacgttgtagtaggccgttattcatcgtggag
aaaaagaagttgataattaagaagaaggatattgtcgcactgcaaatgagggagtcatct
gaagattctggctggcatgatcttgtggcaaaaggatttattgagtatgttgatactgag
gaagaagagactacaatgatcgcaatgaccataaatgatcttacaaattcaaggttgaac
ccagatgaggcttattctgagacctacacacattgtgaaatccatccatctttgatactg
ggagtgtgcgcttcaatcataccgtttccagatcataaccagtcccctcgtaacacatat
caatccgctatgggaaaacaagcaatggggatttatgtcaccaattaccaattccggatg
gatacattggcctatgtactgtattatccacaaaagcctcttgttactacgcgggctatg
gagcatttgcatttcaggcagcttccagctggcattaacgccattgttgccatttcctgc
tattcgggctataaccaagaagattctgtcatcatgaatcaatcttcaattgaccgtggc
ttcttccgctctctatttttccgttcatatcgggatgaagagaaaaagatgggaacactt
gtcaaagaggattttggacgtcctgatagagaacataccatgggaatgcgacatggaaat
tacgataaattagatgatgacggatttgcacctcctggaacaagagtttctggtgatgat
gtcataattggaaagaccacacccatttctcaagatgatgctcaaggacaaccagcaaga
tacacgcgcaaagaccatagtaccagtctacgacatagtgaaactggaattgtggatcag
gttcttttgacaacaaatgcagatggactgagatttgtcaaaataaggatgagatctgtc
agaattccccagatcggagacaaattcagcagtcggcatggacaaaaaggaaccattgga
atgacttacacacaagaagacatgccatggagcgctgaaggcataaccccagatatcatt
gtgaatccacatgccatcccttctcgtatgacaataggccagctagttgagtgtatcatg
gggaaggttgctgctcacatgggaaaggaaggagatgctacccctttcactgatgttact
gtggatagcatcagcaaagctctgcacaagtgtggttatcagatgcgtggttttgagaga
atgtataatggtcatacaggccgtatattgactgcaatgatattcttggggccaacttac
taccagagactgaagcacatggtggatgataagatccattctcgtggccgtggtcctgtg
cagattctcactaggcaacctgctgaagggagatctcgcgatggaggacttcgatttggg
gagatggaacgcgactgtatgatagctcatggagctgcacatttccttaaagagaggctg
tttgatcaaagcgatgcttacagagttcacgtatgccagcaatgtggtttaatggctatt
gctaatctgaaaaagatctcattcgagtgtagatcttgtaggaacaaaactgataatgtt
caggtgtatattccttatgcctgcaagcttctgattcaagagctcatgtcgatggcaatt
gccccaagaatgcttacaaaggaaccaaaaccatcaagtggaaagagagcatcctga
DBGET
integrated database retrieval system
