Lycium barbarum (goji berry): 132639652
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Entry
132639652 CDS
T09483
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT3-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132639652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132639652
Enzymes [BR:
lbb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132639652
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
132639652
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
FAIM1
DZR
Motif
Other DBs
NCBI-GeneID:
132639652
NCBI-ProteinID:
XP_060212077
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All DBs
Position
1:complement(139077397..139083158)
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AA seq
319 aa
AA seq
DB search
MEEMEMDSIECVSLMDGVEDEEIQSSVSSHQYPSSGKPNNIAPVGIVPTSVHELLECPVC
TNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSF
GCPEIFPYYSKLKHETLCNFRPYSCPYAGSECSMTGDIPYLVTHLRDDHKVDMHTGCTFN
HRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYI
YSLEVGGNGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGR
IWKEQQNPDGGVCIPNLCS
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaatggagatggatagcattgagtgtgtatcattaatggatggtgttgaagat
gaagagatccaatcttctgtttcatctcatcagtacccttcttcaggaaagcctaataat
attgctcctgttggaattgtccctactagtgtacatgaattgcttgaatgccccgtttgt
accaactctatgtatccaccaattcatcagtgtcacaacgggcacacgctttgttcaacc
tgcaaaacgagggtgcacaatcgatgtccgacatgcagacaagagcttggtgatataaga
tgtttagcgctagagaaggtggcagagtcacttgaactgccttgcaaatatttttctttt
gggtgcccagaaatattcccatattacagcaaactcaagcatgaaacattgtgcaatttt
agaccgtacagttgcccatatgctgggtcagagtgttcaatgacaggggacatcccttat
ttggttacgcatttaagagatgatcacaaagtggatatgcacacgggatgcacgttcaac
catcgttatgtgaagtctaatcctcgtgaagtagaaaatgccacatggatgttgacggtc
ttccactgttttgggcagtatttctgtctccatttcgaggcattccagcttggcatggcc
cctgtttatatggcatttttacgattcatgggtgatgaaacggatgcacgcaattacatc
tacagtctagaggtaggaggaaatggtagaaagctcatatgggagggtaccccaagaagt
atccgagatagtcatcgcaaggtcagggacagtcatgatggtcttataatccagcgtaac
atggcgcttttcttttctgggggtgaccggaaagagctgaaacttcgagttactggaagg
atatggaaggaacagcaaaatccagatggtggtgtgtgcataccaaatctctgtagctaa
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