Lycium barbarum (goji berry): 132639934
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Entry
132639934 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03013
Nucleocytoplasmic transport
lbb03015
mRNA surveillance pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132639934
09122 Translation
03013 Nucleocytoplasmic transport
132639934
03015 mRNA surveillance pathway
132639934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132639934
03041 Spliceosome [BR:
lbb03041
]
132639934
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132639934
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132639934
Spliceosome [BR:
lbb03041
]
Complex C
Other components
EJC/TREX
132639934
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132639934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
132639934
NCBI-ProteinID:
XP_060212300
LinkDB
All DBs
Position
1:139920861..139928453
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AA seq
429 aa
AA seq
DB search
MGETKENDAYEEELLDYEEDDEKVVPDSANGKVNGESAKKGYVGIHSSGFRDFLLKPELL
RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAL
VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVL
SLARDKDLALRNVRHFILDECDKMLESLDMRRDVQAIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSV
NRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgggagagacaaaggagaacgatgcttacgaagaagagcttcttgactatgaagaagat
gatgagaaggtggtccctgattccgctaacggaaaagttaacggcgagtctgcaaagaag
gggtacgttggaattcacagttccggattcagagacttccttttaaagccagagctactg
cgtgccattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgtattcca
caagcaattctgggcatggatgttatttgtcaggccaaatctggaatgggaaaaactgct
gtttttgttctttcgactctgcagcagattgagcctgttgctggtcaggttgctgccttg
gtcctctgtcatacaagggaattggcttatcagatttgtcatgaatttgaaaggttcagc
acatatttgcctgacatcaaggttgctgttttctatggtggtgtcaatatcaaacttcac
aaggagcttctaaagaatgaatgccctcatattgttgttggaactcctgggagagtactc
tcgttggctagagataaggatctagctctgaggaatgtgaggcattttattctggatgaa
tgtgacaagatgcttgagtctcttgacatgaggagagatgtgcaggcaattttcaagatg
actccccacgacaagcaagtaatgatgttttcagcaacactcagcaaagagatccgccca
gtttgtaaaaagtttatgcaagatccaatggaaatctatgttgacgacgaggccaagttg
acccttcatggacttgtacagcactacatcaaattgagcgaaacggagaaaaaccggaaa
ctaaatgatctactggacgccttggacttcaaccaagttgttatttttgtcaagagcgtg
aatagggcagctgagttgaataaattattagtggagtgtaattttccatctatctgcatc
cactctggcatgacccaggaagaaagattgacccgctacaagggtttcaaggagggtcac
aagagaattctcgtggcaactgatttggttggtaggggcattgatattgagagagtcaac
attgttattaactatgacatgccagattctgcagacacttatcttcacagagtgggtaga
gctggtaggtttggaactaaaggccttgccattacatttgtgtcatctgcatcagattct
gaagttcttaatcaggttcaggaaaggtttgaagtagacataaaagagcttcctgagcag
attgatacttctacatacatgccatcttag
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