KEGG   Lycium barbarum (goji berry): 132640306
Entry
132640306         CDS       T09483                                 
Name
(RefSeq) cullin-4-like isoform X1
  KO
K10609  cullin 4
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03420  Nucleotide excision repair
lbb04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    132640306
  09124 Replication and repair
   03420 Nucleotide excision repair
    132640306
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lbb04121]
    132640306
   03400 DNA repair and recombination proteins [BR:lbb03400]
    132640306
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lbb04147]
    132640306
Ubiquitin system [BR:lbb04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     132640306
DNA repair and recombination proteins [BR:lbb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      132640306
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      132640306
Exosome [BR:lbb04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   132640306
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 Tuberculin
Other DBs
NCBI-GeneID: 132640306
NCBI-ProteinID: XP_060212812
LinkDB
Position
5:complement(7325308..7350866)
AA seq 778 aa
MSKRFCSINTTTGMKKPKCQENNNNNNKLGSMDEPCVSLMQDSGVTSNLSRKKATLPHPS
KKPFVIKLNKAKPAIPTNFEENTWATLKSAIGAIFLKQPDPCDLEKLYQAVNDLCLHKMG
GSLYQRIEEECETHIVAALQSLVGQSEDLVVFLSLVESCWRDFCDQMLMIRSIALYLDRT
YVKQTPNVHSLWDMGLQLFRKHLCLASEVEHKTVFGLLQMIESERLGEAVDRTLLNHLLK
MFTALGIYAESFEKPFVERTSEFYAAEGVKYMQQSDVPDYLRHVEVRLHEEHERCLLYLD
ASTSKPLIATAERQLLKRHISAILDKGFMMLMDGIRIEDLRRMYSLFSRVEALESLKQTL
SSYIRKTGQSIVHDDEKDMVSSLLEFKISVDTIWEESFSKNEAFGNSIKDAFEHLINLRE
NRSAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL
LGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARKKLPTGI
EMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYHGRRLMWQNSLGHCVVKAE
FPKGKKELAVSLFQTVVLMLFNDAEKLSFQDMREATRIEDKELRRTLQSLACGKVRVLQK
IPKGRDVEDDDTFVFNDQFTTPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIV
RIMKTRKVLSHTLLITELFQQLKFPVKPADLKKRIESLIEREYLERDKNNPQIYNYLA
NT seq 2337 nt   +upstreamnt  +downstreamnt
atgtcgaagcgattttgttccatcaatacaacaacaggtatgaagaagcctaagtgtcaa
gaaaacaataacaataacaacaaattgggatccatggatgagccgtgtgtgtcactgatg
caagattctggtgtcacttctaatttgtctcgcaagaaagctacccttcctcacccttct
aaaaaacccttcgttattaagctcaacaaagcaaaacctgcgattccgacaaattttgaa
gaaaatacatgggcaactctgaagtcagctatcggtgcaatattcttaaagcagcctgat
ccttgtgacttggaaaagctttatcaggctgtcaatgacctgtgtctgcacaagatgggt
ggaagtttataccagcggattgaagaagagtgtgagacacacatagttgcagcactgcag
tccttagttggccaaagtgaagatcttgttgtttttctatcacttgttgagagctgctgg
cgggacttctgtgatcagatgttgatgatccgtagtatagcgctgtatctagatagaaca
tatgtgaaacaaaccccaaatgtgcattcattgtgggatatgggcttgcagctttttcgc
aaacatctttgtctagcttcagaagtagaacacaaaactgtttttgggctccttcagatg
attgagagtgaaagattaggtgaggcagttgatagaactctcttgaaccatcttttgaag
atgttcactgccttaggaatttacgcagagagcttcgagaagccatttgttgagcgcact
tctgagttttatgctgctgaaggtgtcaaatacatgcaacagtcagatgttccagattac
ttgaggcatgtggaggtaagattgcacgaagaacatgaaaggtgcttactctacctggat
gcaagtacaagtaaaccactgatagcaactgcagagaggcaacttttaaaacgtcatatt
tcggctatacttgataagggtttcatgatgctgatggatggaatccgtattgaggatctt
cgaagaatgtattcactcttctctagggtagaggcgcttgagtcattgaagcaaactctt
agttcatacatccgaaaaactgggcaaagcattgtgcatgacgacgaaaaagatatggta
tctagcctgttggaatttaagatatctgttgatactatatgggaagaaagcttctctaaa
aatgaagcattcggcaactctatcaaggatgcgtttgaacatctcataaatctccgcgag
aatcggtctgccgagctgattgctaaatttctggacgagaagcttcgtgctggaaataag
ggtacttcagaagaggaattggagggtacacttgataaagtcttggttctgttcaggttt
atacagggtaaggatgtatttgaggcattctacaagaaagatctagcaaagagattattg
ttgggaaagagtgcttcaatcgatgcagagaagtccatgatctctaagttgaagactgaa
tgtggtagtcaattcactaacaaattggaaggaatgttcaaggatattgaattgtcaaaa
gagataaatgaatcctttaagcaatcttctcaagccaggaaaaaactgccaacaggaatt
gagatgagtgttcatgtattaaccacagggtactggccaacatatccgcccatggatgtc
cggctcccccatgaacttaatgtctatcaggatattttcaaggaattctacttgagcaaa
taccacggtaggcggttgatgtggcaaaattctttggggcactgtgttgtaaaagcagag
ttccccaaaggtaaaaaggagctggcagtgtctctgtttcagactgttgttttaatgctt
tttaatgatgcggaaaagcttagctttcaagatatgagggaagcaactcgaattgaggat
aaagagctcaggagaactttacagtctcttgcatgtggtaaagttcgtgttctccagaag
attccaaaaggaagagatgtggaagacgacgatacctttgtgttcaacgatcaatttact
actccactctatcggataaaggtaaatgccattcagatgaaggaaacagttgaggagaac
acaagcaccacagaaagagtattccaagaccggcaataccaggttgatgctgctatagtt
aggataatgaagaccagaaaagtgctgagtcatacccttttgataactgaactctttcag
cagcttaaattccctgtaaaaccagctgacttgaagaaaaggattgaaagcctcatagaa
agggagtatctggaacgagacaagaacaatcctcaaatttacaactatcttgcctag

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