Lycium barbarum (goji berry): 132640472
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Entry
132640472 CDS
T09483
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132640472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132640472
Spliceosome [BR:
lbb03041
]
Complex A
Other components
Complex A specific factors
132640472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
eIF3g
zf-CCHC
RRM_5
PHD_4
KH_PNO1_2nd
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
132640472
NCBI-ProteinID:
XP_060213050
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Position
5:12236309..12239886
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AA seq
821 aa
AA seq
DB search
MDSQSNPAISSETLNQNPSQTLNSYNQYYQNPSQTLDSNPQEPPQGVRQNAEQNNFNSNN
QNFQENPSQQTLDPHTPQGVGQNAEQNSNNQENDNSGQNKMLQKPLLSENGLTSTQSGPE
KDHQSGGEEETTSRRRRRSRWDPPPSDTSNENDGSGPGRKRKSRWADDDPKPVIQLPDFM
KDFGGGIEFDPEVQALNSRLLEISRKLQSGMPLDDRPEGARSPSPEPIYDNMGVRINTRE
YRAREKLNRERQEIISQIIKKNPAFKPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPR
GNTQKRMEKETGAKIVIRGKGSVKEGRLQQKGNLKHDPAENEDLHVLVEADTQESLEAAA
AMLEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEFCRLCGEPGHRQYACPSRTTTFKS
DVLCKICGDGGHPTIDCPVKNTTGKKMDDEYQNFLAELGGTVPESSIKANSATLALGPGS
STGSNPPWASGNNASGVGGTSAHPGLGSNVMKPKEFDETNLYIGYLPPTLDDDGLINLFS
PFGTIVMAKVIKDRLSGLSKGYGFVKYADVQQANSAITGMNGHSLEGRTIAVRVAGKPPQ
PTVPPGPPAPSMPTYPVPNQAPGVYPSQQYATGGPIGAPPPPGGYGGTPVPWGPPVPPPY
GAYPPPGSTMYPPPPPGQFAPPYGAQYPPPPMPPPSSGVPSQTVSSGENQQNYTSSGETQ
QSYPPGVQSHNGAPTYTYGQHAYPPSSYSYPSYYGMAPPPPPPPTGSQSNVDHSQSMSNV
PWATNPPEPAAAAPPPPPPPSAEKPPYGTDAEYEKFMSEMK
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaatccaatccagctatttcctctgaaaccctaaatcaaaacccatcacaa
accctaaattcatacaaccagtattatcaaaacccttcacaaaccctagattcaaatccc
caagaacccccacaaggtgttcgacaaaatgccgagcagaacaatttcaactcaaacaat
caaaactttcaagaaaacccttcccaacaaaccctggatccacataccccacaaggtgtt
ggacaaaatgccgagcagaactcaaacaatcaagaaaacgacaattcgggtcaaaacaaa
atgttacagaagccattgttatccgaaaacgggttaaccagtactcaaagtgggcccgaa
aaggaccaccaatcgggtggcgaagaggaaacaaccagtcgtcgtcgtcgtagaagcagg
tgggacccacctccatctgatacgagcaacgaaaacgacgggagtgggcccgggaggaag
cgtaaatcgaggtgggctgatgatgacccgaagcccgtgatccaattgcctgatttcatg
aaagatttcgggggaggtattgaattcgatcctgaagtacaagcacttaatagtagatta
cttgaaatcagtagaaaattgcaatctggtatgccattagatgatagacctgaaggcgct
cgatcgccttcacccgaacctatatatgataatatgggtgttaggataaatactagagag
tatcgtgctcgagagaaattgaatagagagagacaagagattatatcgcaaataataaag
aaaaatcctgcctttaagccgccagcggattatagaccacctaagcttcataaaaagctt
tatatcccgatgaaagagtacccaggttataattttataggacttataattgggccgaga
gggaatactcagaagaggatggagaaggagacgggggcgaagattgtgattcggggtaaa
gggtcggttaaagaagggaggttacagcaaaaagggaatttgaaacatgatccggcggag
aatgaggatttgcacgtgttggtggaggcggatactcaggagtcgctcgaggccgctgcg
gctatgttggagaagcttttgcagcctgtcgatgaagtgcttaacgagcataagaggcaa
cagcttagggaactcgcagcgttgaatggaacgattagagatgaggagttttgtaggcta
tgtggtgaaccaggtcataggcagtatgcttgtccttctcgtactaccacatttaaaagt
gatgtgctttgcaaaatttgtggtgatgggggacatcctactatagattgtccagtgaaa
aatactactggaaagaaaatggatgatgagtatcagaatttcttggctgaattgggaggg
acggttcctgaatcatcgattaaggcgaactcggcaactctagctcttggtcctggaagc
agcacgggcagtaatcctccttgggccagcggtaataatgctagtggtgttggtggtact
agtgcgcaccctggattagggtcaaatgtaatgaagccaaaagaatttgacgagacaaac
ttgtatattggttaccttcctccgactctggatgatgatggtttgattaacttgttctct
ccctttggtaccatcgtgatggctaaagttataaaggatcgtctcagtggtctgagtaaa
ggttacggttttgtgaagtatgcagatgttcaacaagctaatagtgctattactggcatg
aatggtcattctcttgaagggagaactattgctgtgagagttgctggtaaaccccctcaa
cctactgtgcctccgggcccacctgctccttcaatgcctacatatccggttccgaatcaa
gctcccggagtctatccatctcagcagtatgcaacgggtggtcctattggcgctcctcct
cctcctggtggctatggtgggaccccagttccatggggaccacctgtacctccaccatat
ggcgcttacccgccacctggctcaaccatgtatcctcctcctcctccgggtcaatttgct
cctccatatggtgcacagtatcctcctccaccaatgccaccaccatcttctggtgtcccg
agtcagaccgtttcttctggtgaaaaccaacaaaattacacatcttctggtgagacacaa
caaagttatcctcccggagtgcaatctcataatggtgcacccacttatacctatggccaa
catgcataccctccatcttcatacagctatccttcttattatggcatggcaccacctccg
cctcctcctccaactggatcacagtccaatgtggaccattcacagagtatgagcaatgtg
ccgtgggccacaaatccaccagaacctgcagctgctgcacctccacctccacctccacca
tctgcagagaagcctccatatggtacagatgctgaatatgagaagttcatgtcggagatg
aaatga
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