Lycium barbarum (goji berry): 132640575
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Entry
132640575 CDS
T09483
Name
(RefSeq) uncharacterized protein LOC132640575
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132640575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lbb04131
]
132640575
Membrane trafficking [BR:
lbb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
132640575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
TPR_VPS8_2
ANAPC4_WD40
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
zf-RING_Vps41
zf_RING_Vps8
Beta-prop_EML
WD40
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
132640575
NCBI-ProteinID:
XP_060213188
LinkDB
All DBs
Position
5:complement(16680053..16698475)
Genome browser
AA seq
1904 aa
AA seq
DB search
MELDLDSFLETHTDDDDDDHLLHHRTVDEILLNHTSSSSPSPPSSPSASDGHNYLDRRNR
SVDSSFQSLRLPLELHPTEPRAESSSSKQSSEFSSPPASQNVLPPFFSGVIRSNSKPGDA
LAAAVAASRSIPAPRAAAIKSRKASSGVLQRALESDESAPIAPPAPIDTDVSDKNLDTFG
YSGSLHEIGSEIIGLGGNRKDQFQAAQVQLSDTDNGSREVSTVDAGQDNMNVADADDVSV
VDDFSNKSNLKDALSYTGTQGESPSRTEKDSIFHDSSGLDEIEDRQVQSLFGGEDNVVSA
DSSEEPATKEILSSPVYETLSDEDSTKKDGAEHEHENVIPQSKGEVSSNGDKTDSLNDTA
SIIEELVLQQESMKDSTKPQKNYQCALKPLELAEEAEKKQAFAAMHLEVGASAQPMRLDG
VHRSSNVLGYFDVDDNNTITQTLLSQAFRREHGSSQVLAVHLKYIAVGMSKGSILVMPSR
YSPHHADNMDAKMLTFGLPGDRSHVPVTSLSFNQQGDLLFAGYGDGHYTVWDVQRASVLK
VVTEHKAPVVHLLYLGQDSQVTRQFTVLSGDTKGVVNLDRFTVYPLFNRISLSKSQELLN
ESNSTTLCAVSLLSGESYGGAMVASPEGGSPSLIEEGVVVLGTHQSALVAKLYPTFKVYA
KIPRPDGVREGSMPYAAWKSESMSIETSEKVSLLAIAWDRRVQVAKLVKSELKVCWRWTT
DSSAVGLAWLDEQILVILTATGQLCLFSKDGNLIHQRSFAMDGSCGVDLMSYHAYFSNVF
GNPEKAHHNCLGVRGATLYILRPSQLVVSRLLSWKERIEVLHKAGDWMSALNMAMSLYDG
QAHAVIDLPRNLDDVQKTLMPYLVQLLLSYVDEVFSYIAVTSGNQHGQSGQSNESKYDTD
FVNPDIKEQYTLVGGVSVEFCLHIKRLDVLFDEIFPKYVAVNHKDTFLELLEPYILKDML
GSLPPEIMQALVEHYSTKGWLQRVEQCVLHMDMLSLDFNQVVRLCREHRLHGALIYLFNK
GLDDFRTPLEELFLILRDSKIESATALGYKMLVYLKYCFEGFAFPPGRGSLPPTRVSSLK
RELVQILLEEASSPNSSTAMCLDYSGPHPNLLSLLELDTEATLNVLQYAFVEGENESYSP
AWNPVNSKTETTEVDISTIEGGNLVQKVVDVLAVILNLSYFQTGGSFNNKDEGCTDIWPT
RKDTEYILDFISFFIASEKAKVSKDTLHQIFQYLTLGNESYPNVSGRIVETFNRKQKQLT
ALLEVLPEEDWDAHYLLNLCERAQQHQVCGLIHAITHQYLSALDSYMKAVDEPILAFIFV
DDMLRQLRGKESDTFRSAVISRIPDLLKLNREGAFFLIVNHFGEERDYILSQLRSNPESL
FLYLKTLIEVHSTGTLNFSSLRKDNASDLPCGKKKKHMSSEVYLETLSDLPKLLQNYPIH
ITDEMTELYIELLCRYERKSVLRFLETFESYRVERCLHLCQEYGVIDAAAFLLERVGDIG
SALLLVISSLNEKFILLAAAVESEHCDTAPEHFKAILSKNEVTDILDILRTCIGLCQRNS
PRLDPDEAESLWFQLLDSFCEPLMDSHDHSKISKEEECVQEGEQACIIQWKVSKSHRNAH
ILRKLLSVFIKEIVEGMIGYVSLPRIILKLLSDNETQEFGDFKPTILGMLGTYDFERRIL
DTAKSLIEDDTYSSLSLLKRGASHGYAPRSLLCCICNCPLTKDFSASSIQIFSCGHATHL
QCEPQESEASFRGNSAGCPICLPRKNTEKLRSKSVLVENGLVKSISKSHQTNGMTALYPH
ENDGFDNSYGLQSISRFDLLLNLQKSHQSMQIENIPQLRLAPPAVYHEKVKKRNVQSAGE
SSNSLAKPEKPNRSKHLRDVKLKGSSLRFPLKTNIFGKEKSIKL
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgacctcgattcatttttagaaacacataccgacgacgatgatgatgatcac
ttactgcatcatcgcactgttgatgaaattctcctaaaccacacttcttcttcttcgcct
tctccaccttcttctccatcagcttcagatggacacaattatctagatcgtcgtaatcgc
tcggtagactcgtcttttcaatccctaagacttcctttagagttgcacccgacggagcca
agagcagagtcaagtagtagcaaacaatcaagtgagttttcttcaccaccggctagccag
aatgtgttgccaccgtttttcagtggggtcatcagatcaaattcaaaacccggagatgcc
ttggctgcggctgtcgctgcatcacgctccattcctgcacctcgtgcagcagccatcaaa
tccagaaaagcaagctctggagtgctgcaaagggctttggaaagtgatgaatcggctccc
atagctcctccagctcctattgatactgacgtttctgacaaaaatcttgatacttttggg
tactcagggtctttacacgagattggttctgagattattggcttgggaggtaacagaaag
gatcagtttcaagctgctcaagttcaactaagtgatacagataatggcagtagggaggtt
tctacagtggatgcaggtcaggacaatatgaatgtcgctgatgcagatgatgtttctgtg
gtggatgatttttcaaataaaagtaacttgaaggatgctctaagttatactggaactcaa
ggggaatctcctagtagaactgaaaaagactctatttttcatgatagctctgggttggat
gagattgaagatagacaagttcaatctttatttggaggtgaagataatgttgtaagtgcg
gatagcagcgaagaacctgctacaaaggagatactctcttctccagtttatgaaactctt
tctgacgaagattcaactaaaaaggatggtgcagaacatgagcatgagaatgtaattcca
caatctaaaggagaggtcagttccaatggagataaaaccgattctttaaacgatactgca
agtatcattgaggagttagttctacagcaggaaagtatgaaggatagtacaaagcctcag
aaaaattaccagtgtgccttgaagcccctagaattggctgaggaagctgaaaaaaagcag
gccttcgcggctatgcacttagaagtgggtgcttctgctcaaccaatgagacttgatggt
gttcataggagttctaatgtcttgggctactttgatgtagatgacaacaataccatcacc
caaaccctgttatctcaagctttcaggcgtgaacatggatcttcgcaggtcctggctgtt
cacctcaaatacattgcggtaggaatgtccaaaggatcaattcttgtgatgccaagcaga
tactctccacatcatgctgataacatggacgctaagatgttgacatttggattaccggga
gatagatctcatgtccctgtaacttccttgagctttaatcagcaaggggatttgctcttt
gcaggatatggtgatgggcactatactgtatgggatgtgcaaagggcctctgtgctcaaa
gttgtcactgaacataaagctccagttgtgcaccttttgtatttagggcaagactctcaa
gttactcgccagttcactgtgctcagcggtgatactaaaggtgtagttaacttagacagg
tttacagtgtatcccttgttcaatagaatctccctttcgaagtcacaggaactgctaaat
gaaagcaacagcactacattatgtgctgtatccctactatctggtgaaagttatggaggt
gctatggtggcttctccagagggaggcagcccttctttgattgaggaaggtgtggtcgta
cttggcacacaccaatctgctctagtggcaaaactttaccccacatttaaagtttatgct
aaaatcccacgtcctgatggtgttagggagggttcaatgccatatgctgcttggaaatca
gaaagtatgtccattgaaacatcagaaaaagtttcactgcttgcaattgcttgggatcga
agagttcaggttgctaagctggtgaaatcagagctaaaagtttgttggagatggactacg
gatagctcagcagttgggctggcatggttggatgaacagattttggtaattctcacggca
actggacagctttgtttgttttcgaaagatgggaatttgatccaccagagaagttttgct
atggatggatcttgtggagtggatctcatgtcataccatgcctacttcagcaatgtcttt
ggaaatcctgagaaagctcatcacaattgtttaggtgtcaggggggcaactttgtacatt
cttcggccatcccagcttgttgtttcacgccttctttcctggaaagaacgaatagaagtt
ttacataaagcaggtgactggatgagtgcactgaacatggcaatgtctctttatgatggt
caagcacatgcagttattgaccttccaaggaatttggatgatgtgcagaagactcttatg
ccatatcttgtacagttactgttgtcatatgtagatgaggtattctcctacatagcagtg
acatctggcaaccaacatgggcagtcgggccaatcaaatgaatcaaagtatgacactgac
tttgtgaatcctgatattaaggagcagtatactctggttggtggtgtttctgttgaattc
tgtcttcatatcaagagacttgatgttctctttgatgaaatttttccaaagtatgttgct
gtgaatcacaaggatacattcttggagcttctggagccatatatattgaaagacatgcta
ggatctttaccacctgagataatgcaagcactagtggagcactatagcactaaaggttgg
ttacagcgtgttgaacagtgtgttctccacatggacatgttgtccttggatttcaatcag
gttgttcgcctatgcagggagcataggttgcatggtgcattgatctacttgtttaacaaa
ggtctcgatgattttaggactcctttggaagagctctttttaattttgcgggatagcaaa
atagaaagtgctactgctcttgggtataagatgcttgtttacctcaagtactgcttcgaa
ggttttgcttttcctccagggcgtggaagtctccctcccacacgtgtgtcgtctcttaaa
agagagcttgtgcagattttgttggaggaagcgagttctccaaattcttcgacagcaatg
tgcttagattacagtggaccgcacccaaacctgctctctctgttagagctcgacacagag
gccaccttaaatgttttgcaatatgcatttgtagaaggtgaaaatgaaagttacagtcct
gcatggaatccagtcaattcaaagacggaaacaactgaagtagacatttcaactattgaa
ggcggaaacttagttcagaaagtagtagatgtccttgcggtcattcttaatctgagttat
ttccaaactggtggttcttttaacaataaagatgaaggatgtactgacatttggccgaca
aggaaagataccgagtacatattagattttatttccttttttattgcctctgaaaaagct
aaggtttcaaaagatacccttcatcaaatttttcaatacctgacactgggtaacgaatct
taccctaatgtttctgggcggatagttgaaaccttcaatagaaaacagaagcaactgact
gcacttttagaagtattgccagaggaggactgggatgcacattacttactgaatttatgt
gagagagctcagcagcatcaggtctgcggcttaattcatgccatcacgcatcagtatctt
tctgctttggacagttatatgaaagctgttgatgagcctattcttgctttcatatttgtt
gatgacatgttgcggcaactgagaggaaaagaatctgatactttcagatcagcagtcatt
tctcgaatcccagatctactcaagttgaacagggaaggagctttttttctgattgtcaat
cattttggagaggagagagattacattttgtctcagctgcggtctaatccagaaagtctt
ttcctttatctgaagacactcattgaagttcattcaacgggcaccctaaacttctcttct
ttaagaaaagataatgcttcagacttgccctgtggaaaaaagaagaaacatatgtcctct
gaagtgtacctggaaaccttgtctgacttacctaagctcctgcagaattatccaattcac
ataactgatgaaatgacggagctttatattgagctattatgtaggtacgagcgtaagtca
gttctcagattcttggagactttcgaaagctatagggtggaacgctgcttgcatttatgc
caggagtatggagttatagatgcagctgctttcttgttagaaagggttggtgacatcgga
agtgcccttttacttgttatatcttcactcaatgaaaaattcatcctgcttgctgctgct
gttgaaagtgaacactgtgatacggctcctgagcatttcaaagctattttaagcaagaac
gaggttactgacatactagatattttgcgcacttgtattggactgtgccagaggaatagc
ccccgattggaccccgatgaagccgagagtctgtggtttcaattgcttgattctttttgt
gagcctttgatggattcacatgaccatagtaaaataagtaaagaagaagaatgtgtgcaa
gaaggtgagcaggcttgcataattcagtggaaggtgtcaaaatctcatagaaatgctcac
atcctcaggaaactgctctctgtgtttatcaaagagattgttgaaggaatgattggatat
gtaagcctcccgaggatcatattaaagcttctttcagataatgagacacaagaatttggt
gatttcaaacctactatactggggatgcttggaacatatgattttgagaggcggattttg
gataccgctaaatcattgattgaagatgatacatattcctccttgagcttactgaagaga
ggagcttctcatggatatgcaccgcgaagcctcctctgttgcatttgtaactgtcccctc
acaaaagatttctcagcctctagcattcaaatttttagttgtggtcatgcaacgcatctc
caatgcgaacctcaggaaagtgaagcatcattcaggggcaactcagctggatgtcctatt
tgtctgccaagaaagaataccgagaagttgagaagtaaatctgtgcttgtggagaatgga
ttggtgaagtctatatcaaaatcccatcaaacaaatgggatgactgctctatatccccat
gagaatgatggtttcgacaactcctatggacttcagtccatttcaaggtttgacctcctc
ctcaatcttcaaaaaagccatcagtcgatgcaaatagagaatatccctcagttgaggctt
gcaccacctgctgtgtaccatgaaaaggttaagaaaagaaatgttcagtcagctggagaa
agcagcaacagtctggcaaaaccggagaaaccaaacaggagcaagcatctcagagatgta
aaactgaagggatcatcactacggttccctttaaaaacaaatatatttggtaaagagaag
agcattaagctgtga
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