Lycium barbarum (goji berry): 132640604
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Entry
132640604 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132640604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132640604
03041 Spliceosome [BR:
lbb03041
]
132640604
03009 Ribosome biogenesis [BR:
lbb03009
]
132640604
03016 Transfer RNA biogenesis [BR:
lbb03016
]
132640604
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132640604
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132640604
Spliceosome [BR:
lbb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132640604
Complex C
U4/U6.U5 tri-SnRNP related factors
132640604
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Helicases
132640604
Transfer RNA biogenesis [BR:
lbb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132640604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ATPase_2
DUF3713
Motif
Other DBs
NCBI-GeneID:
132640604
NCBI-ProteinID:
XP_060213236
LinkDB
All DBs
Position
5:17877379..17887268
Genome browser
AA seq
992 aa
AA seq
DB search
MESSSTTAIKRKEPEEQVENQNSSSKRVNLVRTCVHEVAVPTNYTSTVNSSIHGTLSNPS
YNGEMAKKYPFKLDPFQEVSVACLERKESILVSAHTSAGKTAVAEYAIAMSFRDKQRVIY
TSPLKALSNQKYRELSHEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVA
WVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHVV
YTDFRPTPLQHYMFPVGGSGLYLVIDENEQFREDNFLKMQDSFSKQKVGEGNNSGNAKVR
GRIAKGGSTSGGASDICKIVKMIMERKFQPVIVFSFSRRECEQHAMSMPKLDFNTEEEKD
VVKEVFRNAVECLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLIKA
LFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM
IDEKMEMNSIKDMVLGKPAPLVSTFRLSYYTILNLLSHAQGQFTAEHVIKNSFHQFQYEK
ALPDIGKKVSKLEQEAAKLDASGEGEVAEYHKLKLEIAQREKKLMAEITRPERVLHFLLP
GRLVKVWEGGKDWGWGVVVNVVKKPPAASGSLPAALSASRGAGYIVDTLLHCSLGSGENG
SQPKPCPPRPGEKGEMHVVPVQLPLISSLSKLRISVPTDLRPLEARQSILLAVQELHKRF
PQGLPKLNPVKDMGFEDPEFVDIVNQTEELEKKLFAHPLHKSQDEHQLKSFQKKAEVNHE
IQQLKSKMRDSQLQKFRDELRNRSQVLKKLGHIDSEGVVQLKGRAACLIDTGDELLVTEL
MLNGTFNDLDHHQTAALASCFIPGDKTNEQIHLRAELTRPLQQLQDAARKIAEIQRECKL
EINIEEYVEASVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRLVRRLDEFLNQLKGA
AHAAGEVDLENKFAAASESLRRGIMFANSLYL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttcttctacaactgccataaaaaggaaagaacctgaagaacaagttgaaaac
caaaattcatcttcaaaaagagtcaatttggttagaacttgcgtacacgaagttgcagtt
ccaacaaattacacatcaacagtaaactcatcaattcacggtaccctttcaaacccatca
tacaatggcgaaatggcgaaaaaatacccgtttaaactggacccatttcaagaagtatca
gttgcttgtttggaaaggaaagaatcaatacttgtatcagcacatacatctgctgggaaa
actgctgttgctgagtatgcaattgcgatgtcttttagagataaacaaagggttatttat
acgtcgccgttgaaggctttaagcaatcagaagtatagagagttgagtcatgagtttagt
gatgttggtttaatgactggtgatgtaactctttcgccaaatgccagttgtttggttatg
actacggagattttgaggggtatgctttataggggttccgaggtactaaaggaagttgct
tgggttatatttgatgagatacattacatgaaagatcgggagagaggggttgtttgggaa
gagagtattatattcttaccaccagctattaagatggtttttctttcggcgactatgtcg
aatgctactgagtttgctgaatggatatgcaatattcataaacagccatgtcatgtggtg
tacactgattttcggcctacccctttgcagcattatatgttccctgtgggtggttctgga
ttatatcttgtgattgatgagaatgagcagtttagggaggacaatttcttgaaaatgcag
gacagtttttccaagcagaaagtgggggagggaaacaacagtggaaatgctaaggttaga
ggtagaattgctaaaggtggttctacttctggtggtgcgtctgatatctgcaaaattgtc
aagatgatcatggaacggaagtttcagccagtcattgtgttcagttttagtagaagagaa
tgtgaacaacatgcaatgtctatgcccaagcttgattttaatactgaagaggagaaggac
gtagtgaaggaggttttccgtaatgcagtggaatgcttgagtgaggaagatagaaactta
ccagctattgaattaatgttgcccctacttcagcgggggattgcagttcaccactctggc
ctgcttcctgttatcaaggaacttgtggaacttctgttccaggaaggactcataaaggct
ctttttgcaacagagacatttgccatggggcttaacatgcctgcgaaaactgttgtcttt
accagtgtaaagaaatgggatggtgatagtcatcgttacattggatctggtgagtatata
cagatgagtggaagagcaggacgtcgtggcaaagatgaccgtggtatttgtattatcatg
attgacgagaagatggagatgaatagcatcaaggacatggttttgggtaaaccagctcca
ttagtcagcacgtttagactgagttactatacaattttgaatttattgagtcatgcccaa
ggccaatttactgccgaacatgttatcaaaaactcattccaccagttccagtatgagaag
gcgttacctgacattggaaagaaggtctctaagctggaacaagaagctgcaaagcttgat
gcatcaggggagggtgaggttgcagaatatcataaactaaagcttgagattgcacaacgt
gaaaaaaaactgatggctgaaataacacggcctgaaagggttctccattttcttcttcct
ggtagactggtcaaggtatgggaaggtggaaaagattggggttggggtgttgtagtcaat
gtggtaaagaaacctccagctgcatcaggttccttgcctgctgctctctctgcttcacgt
ggcgcgggctatattgtggataccctacttcattgctctcttggttctggtgaaaatggt
tctcaacccaaaccatgtcctcctcgtccaggggagaagggagaaatgcatgtggttcct
gttcaattgcccctgatttcttccctcagtaagcttagaatatctgttcctactgatctt
cggccattggaagcaaggcaaagcatcctacttgctgttcaggagcttcataaacgtttt
cctcaaggcctcccgaagcttaaccctgtaaaggacatgggctttgaagatcctgaattt
gttgatatagtcaaccagactgaagaactagagaaaaaattgtttgctcacccactgcac
aagtcacaagacgaacatcaacttaagagtttccaaaagaaggccgaagtgaaccatgaa
attcaacagctcaagtcaaaaatgcgcgattcacagcttcaaaaatttcgggatgaactt
agaaaccgttctcaagtgctgaagaagctgggtcacatagattctgaaggtgttgtgcag
ttgaagggacgagcagcctgcttgatagacactggggacgaactcctcgtgactgaattg
atgttgaatggtacattcaatgatcttgatcatcatcaaactgcggctctggcaagttgc
tttatcccaggagacaaaacaaatgaacaaatacatttaagagctgagctaactagacca
ttacaacagctacaagatgctgcaagaaaaatagcagagattcaacgtgaatgcaagttg
gagataaatattgaagaatatgtagaggcatcagtacggccattcttgatggatgtcatt
tactgttggtcaaagggagcaacttttgcggaggttatacaaatgactgatatctttgaa
ggtagcatcattcggctggtacgaaggcttgatgaatttttgaaccagttaaaaggtgct
gcacatgctgcgggagaagtggatttggagaacaaatttgctgctgccagtgagagcctt
cgacgaggaataatgtttgcaaattctctgtacctctag
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