Lycium barbarum (goji berry): 132640668
Help
Entry
132640668 CDS
T09483
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132640668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132640668
Enzymes [BR:
lbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132640668
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
132640668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
132640668
NCBI-ProteinID:
XP_060213337
LinkDB
All DBs
Position
5:complement(20169013..20190774)
Genome browser
AA seq
1546 aa
AA seq
DB search
MIQGATETVEAVHFSFMTNEEVHKHSVVKVTNPNLLDTIGQPVPGGLYDPAMGSLDDNSQ
CKSCGQRSRHFPGHCGHIELVSPVYNPLLFNMLYNLLQRTCFYCLHFRAPREEVIFFGIG
PTEKCVSELESIVKGDVIGAKNVISSDNSTDQEESEGSHMSCTIDDLNLQDRSEYNKRSC
WDNFQFTEAMAVIDGILKTKSKKCSNCKAKNPKITKPSFGRFHMDTSSTEIKKNFIKDQK
FNLRYAGGSEENPSPEVLNATELLGEAETSLYEASSDGLENSMARGRHGVDQSGVIKQQK
DLLSLAQLPSLVRNIIKGLWENEARLCEFFCDIQGFHRDAPDKVAGPSMFFLDSILVPPI
KFRPPAKGGNSVMEHPHTVLLGKVLQSNIALGNAHMNRAGGSKIISCLMDLQQSVNVLFD
SKTAAGQGQKDVGTGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPY
FALRLTYPERLTPWNAFKMRDAILNGPETLPGAVSVADRISIVKLPPGRDLRKAISRKLP
SSRGAVTQSGRDNEFEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRILKGEKTLR
MHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIV
GSVLLTMKNTFLTLEEFNQLLYGSGMFAAGSGLTSGNHLNKVPVIDSEGFVQTILPAVWK
PKPLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSQSRLAEYQSSEEEEEEDRTA
ENKFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQFHGFT
CGIDDLVILPHYDIRRKEELEGEDVGEEAHCDFVKFKRGEIGPLELQLEIEKAISSNKEA
ATATLDMKMKNKLVNKGSQFNKELLLKGLLKRFPRNCIALMTITGAKGSTNQETICQKLC
HGRKLNSYIEKLPDGLEEKVKHFWENKAKKLEKKLEKQVKKEEILKQLKEEEADFLQLVE
QKYLSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASD
VIKTPIMTCPFLGWKSKDDAQSLLAEVKKITLADVIESMEVNLFPLSIHNNKISRLYKLT
VKLKKHEFVSSEDCKYTLKYVFKRELEDAIESHLALLSKINGIKDFKSSSESVASNETEE
NASSTRHDEEKLDDDDDDDDDDDDDDEAEDERTEDLSSDAQKRKRQTTDEMDYGDGCEDE
AETTAEVEEGEPDQGHDTGSREEEEETGDPGNEEQTPSKSKTEKTIKQKKNKEKHSKKDS
DRSVFTAVEGLHFEVHFRFIDEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENT
VIWDEKQTKKQSQVADSAYWALKAAGIDFGTFWKMQDHLDVNRIYTNNIRAILNTYGVEA
ARAAIIREVKTVFGIYGVEVEYRHLSLIADYMTHTGGYQPMSRHGRISESLSPFLKMSFE
TASKFIVEAASHGLTDYLETPSSRICLGLPVKMGTGCFDIMQNLDI
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atgattcagggtgcaacagagaccgttgaggcagttcacttcagtttcatgacaaatgaa
gaagttcataagcatagtgttgttaaagttacaaaccctaatttgctcgatacgataggg
cagcccgttcctggtgggctttatgacccggctatgggttcccttgatgataattctcaa
tgtaaatcatgtggccaacgttcacgtcacttccctggtcactgtggtcatattgaactt
gtttcgccagtctacaatcccctgcttttcaatatgctttacaatcttctgcaaagaaca
tgcttttattgcttgcattttagggcaccaagagaagaggtaattttctttgggattgga
cccacagaaaagtgcgtctccgaattagagtcaatcgtaaaaggtgatgttattggggcc
aaaaatgtcatctcttctgataattcaactgatcaggaagaaagcgaaggaagtcatatg
tcatgtacaatagatgacttgaatttgcaagatcgttctgagtacaataaaaggtcatgt
tgggacaatttccagttcactgaagccatggcagttatcgatggaattctcaagacaaaa
tctaagaaatgtagcaactgtaaagcaaaaaatccaaagatcaccaaacctagttttgga
cgatttcatatggatacctcaagtacggaaatcaagaaaaattttataaaagatcagaag
ttcaatctgcggtacgctggtggaagtgaggaaaatccttcccctgaggtgttaaatgcc
actgagctattaggggaagctgaaaccagcttatatgaggcttcctccgatggattagaa
aattctatggctcgtgggaggcatggggttgaccagtctggtgtgattaagcaacagaaa
gacttattatcattagctcagttgccttctctggtcagaaatattataaagggtttatgg
gaaaatgaagctcgtctttgtgagttcttctgtgatattcagggttttcaccgtgatgca
cctgacaaggtggctggaccctccatgttctttttggactccattcttgtaccaccgatc
aagttccgtcctccagccaaagggggtaattcagttatggagcatccacatacagttctt
cttggcaaggtcctacagtcaaatatagctttgggaaatgctcatatgaaccgggctgga
gggtctaagatcattagctgcttgatggatcttcaacaatctgtaaatgtgctgtttgat
agcaaaacagctgctggtcaaggtcaaaaagatgttggtacgggcatatgtcaattgttg
gaaaagaaagaaggtatcttccgccagaaaatgatggggaagagagtcaattttgcctgc
cgatcagttatatctccggacccttatttgtctgtcaatgaaattgggattccaccatat
tttgctttaaggctaacctatcctgagaggttgactccttggaatgctttcaaaatgaga
gatgctattctcaatggacctgaaacccttcctggggctgtctctgttgctgatagaata
tctatcgtgaaactgccaccaggtagagacttgcgtaaagcaatatctagaaaattgcct
tcttccaggggagcagtgactcaatctgggagggacaatgagtttgaatttgaaggcaaa
gttgtttatcggcacttacaagatggggatattgttcttgtgaatcgacagcctaccctt
cacaagcccagtataatggctcatgttgtccgcatattgaaaggagagaaaacacttcgc
atgcactatgctaattgcagtacctataatgcagattttgacggtgatgaaatgaatgtc
cactttccacaagatgaaatttctcgtgccgaagcatataacattgtaaatgctaacgaa
cagtacattgttccgaccaagggagatactgttagaggccttattcaggatcatattgta
ggttcagtgcttcttaccatgaagaatacatttttgacccttgaggagtttaaccagctt
ctgtacgggtctggcatgtttgctgctgggtccggtttaacttccggaaatcatttaaat
aaagttcctgtaatagattctgaaggttttgtacagactatcttgcctgctgtgtggaaa
ccaaagcctctttggacagggaagcaggtcatcactgctttactgaatcatctgacaaag
ggctgtgcaccttgtaccgtgaaaaacaaagggaaaattccatatccgtatttcctgagc
cagagtcgcctagctgagtatcagtcaagtgaagaagaagaagaagaagatagaactgct
gaaaataaattcctaatttggaaaaatgagcttgtgcgtggtgtaatcgacaaggctcag
tttggaaagtttgggttagttcacacgattcaggagctttatgggtccaacaaagcaggc
attttactttctgctctgagtcgtttatttactattttcttgcagtttcatggcttcact
tgtggtattgatgatcttgtcatcttaccacattacgatattcgaaggaaggaggaactt
gaaggagaggatgttggtgaagaggctcattgtgattttgtgaagttcaagaggggagaa
ataggccctttggagctccaactagaaattgaaaaagccataagcagcaataaagaagct
gctacagcaaccttagacatgaaaatgaaaaataaattggtgaataaaggctcacaattt
aataaagagttgctgctgaaaggattgttgaaacgtttccctcgaaactgcattgccctt
atgacaattactggggcaaaggggagtacgaatcaagaaaccatctgccaaaagttgtgt
catggacgcaagctcaactcatatattgagaaattgcctgatggcctggaagaaaaagtg
aagcacttctgggaaaacaaagcgaaaaagttagagaagaaactagagaagcaagtgaaa
aaggaagagatattaaagcaactgaaagaggaggaggcggactttctacaattagtggaa
caaaaatacctctcaagtctcgccgattcgggagagccggttggtgtccttgctggtcag
tcagttggtgaaccatcaacccaaatgacattgaatacttttcatcttgctggtcgtgga
gaaatgaatgtcactcttggaattccacgtcttcaggagattttgatgactgcctctgat
gtgattaagactcccatcatgacgtgccccttccttggttggaaatcaaaggatgatgcc
cagtctcttttggcagaagtgaagaagatcactcttgcagatgtgattgagagtatggaa
gtgaatctttttccactatcaatccacaacaataaaatttctcgactttacaagctcacg
gtgaagctaaaaaagcatgaatttgtgtcatcagaagattgcaagtataccctaaaatat
gtgttcaaaagggaattggaggacgcaatagaaagccatttggccttgctctctaaaatt
aatggcataaaggacttcaagtcaagctcggaatcggtggcttcaaatgagacggaagaa
aatgcttccagtaccagacacgatgaggaaaagctggatgatgatgatgatgatgatgat
gatgatgatgatgatgatgaagccgaggacgaaagaaccgaagatcttagttcagatgca
caaaaaagaaaacggcaaaccacggatgagatggattatggggacggttgtgaagatgaa
gctgagaccactgcggaagttgaagaaggggaacctgatcaagggcatgacactggaagt
agggaggaagaagaggaaactggagaccctggcaatgaagagcagacaccaagtaagtcg
aagaccgaaaagactatcaaacagaagaaaaataaggaaaaacatagcaaaaaggattca
gacaggtccgtctttactgctgtggagggattgcatttcgaggtccactttagattcatc
gatgaacctcatatcttgctagctcaggttgcccagaagactgcaaagaaagtgtatatt
aagaactccggtaaaatcgaccaatgcagaatggtcaagtatgaagtaactgaaaatact
gtaatttgggatgaaaagcaaacaaagaaacaaagccaagtcgctgattctgcttattgg
gccctgaaagcagctggaatagattttggaaccttttggaaaatgcaagatcatcttgat
gttaatcgaatatacacaaataatattcgtgctatactgaatacatatggagttgaagct
gcccgagcagcaatcatacgagaggttaagacagtttttggaatatatggggttgaggtt
gaatatcgacatttgagcctaatagctgactacatgactcatacgggtggataccagcca
atgagcagacatggaaggatatccgagtctttgtcaccgttccttaagatgtcttttgaa
acggcttccaaattcattgtcgaagcagcctctcacggtttgactgactacttggagacg
ccatcctccagaatttgcttaggtttgccagtgaagatgggtactggttgttttgacata
atgcagaatttagatatttga
DBGET
integrated database retrieval system
