Lycium barbarum (goji berry): 132640763
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Entry
132640763 CDS
T09483
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03440
Homologous recombination
lbb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132640763
03450 Non-homologous end-joining
132640763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbb03032
]
132640763
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132640763
DNA replication proteins [BR:
lbb03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
132640763
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
132640763
BRCA1-C complex
132640763
NHEJ (non-homologous end-joining)
MRX complex
132640763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SMC_N
AAA_15
Rad50_zn_hook
SbcC_Walker_B
AAA_29
APG6_N
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
132640763
NCBI-ProteinID:
XP_060213502
LinkDB
All DBs
Position
5:complement(26556243..26605340)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKVACTGEMPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQSQEIKTYKLKLENLQTLKDGAYKLRESIAQDKEKTEALKS
QMEELEKEIQTLDSKIHHTEATLKDLLQLQRDIATKNAQRSTLFKEKEKQYAALAEENED
TDEELREWKTKFDERIALLESKISKLEREMNDSEIKSSNLKQSMTNYIVEISKLQADAEA
HAKLKNERDCTLRKLFDRYNLGAVPSGSLSDDVALNLANRIEQRLKHFDKDLQDKKESNE
AEIAAAWHQYDIANRKWSEMEAQKQAKADIKNGILKRIKEKEDERDKFELQISDVNVAHL
DEREKKMQIESERKSKQLAEREFDLNIRQKQTEMYIVDQKLNDLRTEKDHMAAESEDRIK
LSLKKAELEILEKKHKKIMDDNKDKVKGVLKGRLPSDKDLKKEVTQAQRALQREVDDLSV
KAREAEKEVNMLQMKIEEVNHNLTKYHKDMDSRKRFLESKLQLMDQEFAGVDSYPKIMDS
VKEKRDVQKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQRVKAAS
SAEHIKVLAMESSNADSRFQQIDKLRLVYEEYVKVGKESIPQAEKNLNELNEELDQKNQA
LDDVLGVLAQIKAEKDAVDALIKPVETSDRHFQEIQALQKQVDDLEYGLDMHEIGVKSME
EIQSELDELQSKKDNLYTEVEKLRNDQRYMEIECASFQLRWANVREEKSQVANILDQFKR
LEEELDRFAEEKNQIELEEKHLAEAFGPLLKEKERHLKHHAELKKELGKELEQQAEIIRD
YQQEVLTLRKINSKIKEYYDLKKEQRLNELQDKQSVSESQLLSCESRKNEVSAEVMKSKD
LMRNQDHLRRNIEDNLNYRKTKAEVDELTHEIELLEDKVLTVGGFSTVEAELKKLSHERE
RLLSELNKCHGTLSVYQNNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
SALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGSGTRSYSYRVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL
RIMEDRKGQENFQLIVITHDERFAQYIGQRQHAEKYYRITKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtagataagatgctcataaagggcatccgtagctttgatccagagaacaaa
aacgtcatcacatttttcagacctttaaccctcattgttggccctaacggtgccggaaaa
accactataattgagtgcttgaaggttgcctgcactggtgagatgccgccaaatgctcgc
tctggtcacagcttcatccatgaccctaaggtggctggagagacggagacaaaggggcag
ataaagttgcggttcaagacagcagcagggaaagatgtggtgtgcattaggtcttttcag
ttaactcagaaggcaacaaagatggagtacaaggccattgagagtgttctacagactatc
aatcctcacactggagagaaagtctgcctaagttatagatgtgctgatatggaccgagaa
atccctgcgctcatgggtgtctcaaaggctattcttgaaaatgtgatatttgttcaccaa
gatgaggcaaactggccattacaagatccgtctacactgaaaaagaagtttgatgatatc
ttctccgctactagatacacgaaggcattggaggttatcaaaaagcttcacaaggatcaa
tctcaagaaataaagacatataagttgaaattggagaatcttcagacattgaaagatggt
gcttacaagttgcgggaaagcattgcccaagacaaagagaagacagaggcactgaaaagt
cagatggaggagcttgaaaaagagattcagactctagatagtaagatccaccatactgaa
gcaactttaaaggaccttcttcaattgcagcgagacatagccactaaaaatgctcaaagg
agcacattgttcaaggaaaaggaaaagcagtatgcagcacttgcagaggagaatgaagac
actgatgaagagcttagggagtggaagacaaagtttgatgaaaggatagcacttctggaa
tcaaaaattagcaagttggagagggaaatgaatgactcagagataaagagctccaacctt
aagcagtccatgacaaactatatcgtggagatcagcaagcttcaagctgatgctgaagct
catgcaaagttaaagaatgaaagagactgcactctcaggaagctctttgacagatacaac
ttaggggctgttccaagtgggtcactcagtgatgatgttgctttgaatttagcgaatcgt
atagaacaacgattaaaacattttgataaggatttacaagataaaaaggaatcgaatgag
gcagaaattgcagctgcatggcatcaatacgacattgcaaatcgcaaatggagcgaaatg
gaggcgcaaaaacaggctaaagcagatattaagaatggcattttgaagcgcattaaagag
aaagaggatgagcgtgataagtttgaacttcagatttctgatgttaatgtggctcatctt
gatgagagggaaaagaaaatgcaaattgaatctgagaggaagtctaagcagcttgcagaa
agagaattcgacttaaacataaggcaaaagcagactgagatgtacatcgtagaccaaaaa
ctaaatgatcttcgtactgaaaaagatcatatggccgctgagtctgaggacagaattaag
ctctctcttaagaaggcagagttggaaattctcgagaagaaacataaaaagataatggat
gataacaaggataaggtaaaaggagtgttgaaaggaaggcttccatctgacaaggacttg
aagaaagaagttactcaggcacaaagggctctccagagagaggttgatgacttgagtgtc
aaagcccgcgaagctgagaaggaggtcaatatgttgcagatgaaaatagaagaagttaat
cataacttgaccaaatatcacaaggacatggactcaagaaagagatttctggaatcaaag
ctccagttgatggaccaggaatttgctggtgtagactcctatcccaaaattatggactca
gtcaaagagaaaagggatgtccagaaaagcaagttcaacatcgcggatggtatgcggcaa
atgttcgatccatttgaaagagttgctcgtgctcatcatatttgcccttgctgtgagcgt
cctttctctgctgaagaggaggatgaatttgttaagaagcaacgagtaaaagctgcaagc
tctgctgagcatattaaagtattggctatggagtcttcaaatgctgattctcgtttccaa
caaatagacaagcttcgtttggtttatgaagagtatgtcaaagttggaaaggagtcaata
cctcaagcagagaagaatttaaatgagctaaatgaagaattggaccaaaaaaatcaggct
cttgatgatgtgttaggtgttttggctcagataaaggctgagaaggatgcagttgatgcg
ttaataaaacctgtagaaacatctgacaggcatttccaagaaattcaagctctgcagaag
caggttgatgatttggaatatggtcttgatatgcatgagataggagtaaaatctatggag
gaaattcaatcagaattggatgaactgcagagcaaaaaagacaatttgtacacggaggtg
gagaagctgagaaatgaccagagatacatggaaattgaatgtgcaagtttccaattaaga
tgggctaatgtaagagaagagaagtcacaagtagcaaacatattggaccaatttaaaagg
ctagaagaggaattggatcgctttgctgaggaaaaaaatcaaattgagcttgaagagaag
catcttgcagaggcttttggtcccttgttgaaggaaaaggaaagacatttgaagcaccac
gcggaactgaaaaaagaacttggtaaagagttggaacagcaggcagaaattataagagat
tatcaacaggaagtacttacacttcggaagattaactccaaaattaaagagtattatgat
ttgaaaaaagaacaaaggttgaatgaactgcaggacaagcaaagcgtgtcagaatctcag
cttctaagttgcgagtccagaaagaatgaggtttcggctgaagtgatgaaaagtaaggat
ttgatgcggaaccaggatcatttgagacgcaacattgaggataacttgaactataggaaa
actaaggctgaagttgatgagctcacccatgagattgaattactggaagataaagttctg
acggtgggtggcttctccactgttgaagctgagcttaaaaagctttcacacgaaagagag
aggctactttctgagttaaacaagtgccatggcaccctatctgtttatcaaaacaatatc
tccaagaacaaagtcgatcttaagcaggcacaatacaaggatattgacaaacgctatttt
gatcagctaatccagcttaagactacagagatggcaaacaaggatctggatagatattac
agtgcccttgacaaagcactgatgcgtttccacacaatgaaaatggaagagataaataag
attatcagggaactgtggcaacaaacataccggggccaggacatagactacataagcatt
cattcagattctgaaggttccggcactcgatcttacagctatagggttttgatgcaaact
ggtgatactgaactagaaatgcgagggaggtgtagtgctggccaaaaggtccttgcatca
cttatcatacgattggcattggctgaaactttttgtctcaactgtggaattctagcactg
gatgaacctaccacaaacctagatggccccaacagtgagagtcttgctgcagctctgtta
agaattatggaggacagaaaaggccaagaaaactttcaactaattgtcattacacatgac
gagagatttgctcaatatattggtcaacgccagcatgcagaaaagtattatcgcatcaca
aaagatgaccatcagcacagcataattgaagctcaggaaatatttgattga
DBGET
integrated database retrieval system
