Lycium barbarum (goji berry): 132640859
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Entry
132640859 CDS
T09483
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03030
DNA replication
lbb03420
Nucleotide excision repair
lbb03430
Mismatch repair
lbb03440
Homologous recombination
lbb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132640859
03420 Nucleotide excision repair
132640859
03430 Mismatch repair
132640859
03440 Homologous recombination
132640859
03460 Fanconi anemia pathway
132640859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lbb03000
]
132640859
03032 DNA replication proteins [BR:
lbb03032
]
132640859
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132640859
Transcription factors [BR:
lbb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
132640859
DNA replication proteins [BR:
lbb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
132640859
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
132640859
MMR (mismatch excision repair)
132640859
DSBR (double strand breaks repair)
HR (homologous recombination)
132640859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
PH_AIR9
Motif
Other DBs
NCBI-GeneID:
132640859
NCBI-ProteinID:
XP_060213635
LinkDB
All DBs
Position
5:complement(57318153..57322680)
Genome browser
AA seq
656 aa
AA seq
DB search
MPVNLTANAITAINGGDVNSKPVVQVLDIKLIGTTQERYRLTLSDSESTQQAMLATQLND
RVKNGRVRKTSVIQLIEYICSTVQNRKIIVVLNMETIIPECEIIRNPNVIVESNSGGQKT
ISNGASVSAILSNNGNLSAQRSGQANFANTNNLSAQRSGKASFANSKNLSAQNSGNSMQN
YPPAIQPAYQPPPNYKSHGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNN
SRGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEKIEAGKVYMISKGSLKPAQKNFNHLK
NEWEIFLETTSTVDLCPEEDPSIPRQQFSFRPISEIESAESNSIIDVIGIVTAINPSVPI
LRKNGMETQRRILNLKDQSGRSVELTLWGDFCNREGQNLQELAEAGFSPVLAVKAAKVSD
FTGKSIGTISSTQLFINPDFTEAQTLRQWFDQGGKDIASQSISRENMPVGSKNEIRKTVS
QIKDEGLGRSDKPDWVTVKATITFIKTDTFCYTACLLMIGDRQCNKKVTRSGNSRWQCDR
CNQVFEECDYRYLLQAQIQDHTGLTWVTTFQESGEEILGCPAKELYMMKYEEADDTRFSE
IIRNCLFRQFMFRLKIKEELYGDEQRVKITVVKADKVNHSVESRHLRDLISKFRLY
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgccggtaaacctaacggcaaacgcgatcacggcgatcaacggcggtgacgtgaactca
aagccagtagtgcaggtgttggatattaagctaatcggcaccacacaggaacgctaccga
cttacgctatctgattccgagtcgactcagcaagctatgttagctactcagcttaatgac
agagtcaaaaatgggcgcgtcaggaaaacgtccgttattcagttgattgaatatatctgt
agcactgttcaaaatcgcaaaatcattgttgtcctcaacatggaaactattataccagaa
tgtgaaataattaggaaccccaacgtgattgtagaatctaattcaggaggtcagaaaact
atatctaatggagcttctgtgtctgcaatcttgagtaacaatggtaacttgagtgctcaa
agatccggccaagcaaactttgctaacactaacaatttgagtgctcaaagatctgggaaa
gcaagctttgctaacagtaagaatttgagtgcccaaaattcaggtaatagcatgcagaac
tacccacctgcaattcaacctgcataccaacctcctccaaattacaaaagccatggggca
atcatgaagaatgaagcacctgcccgcattattccaattgcagcattgaacccctatcag
ggtcggtgggctattaaggctagagtgactgcaaagggggatctacgtcgctacaataat
tctagaggagatggaaaggtcttctcctttgatctccttgactctgatgggggtgaaata
cgtgtcacttgctttaatgctgttgttgatcgcttttatgaaaaaattgaagctggaaaa
gtgtacatgatatcaaaaggaagcttgaaacctgctcagaagaacttcaaccatctgaag
aatgaatgggaaatatttttggagacaacttcaacagtagatctctgtccagaggaagat
ccctctataccaagacagcagttctcatttagacctattagtgaaattgaaagtgcagaa
agcaattcaatcatagatgtgattggaattgtgacagcaatcaatccttctgttcctatc
ctgagaaagaatggaatggaaactcaaagaagaatcttgaatctaaaggatcagtctggg
cgaagcgttgagctgacactatggggagatttctgtaacagggaaggacaaaatctgcaa
gaactggcagaagctgggttttctcctgttttagctgttaaagctgcaaaagttagtgat
ttcactgggaaatccattggaaccatttcttccactcaattgttcataaatccagatttc
acagaggctcagactctaagacagtggtttgatcagggaggaaaagacattgcttctcag
tctatatctagggaaaacatgcctgtaggatcaaaaaatgagatacgcaagactgtctct
cagatcaaggatgaagggcttggtaggtcagataaaccagattgggttacagttaaggca
accataacattcatcaaaactgacactttctgttatactgcttgccttttgatgattgga
gatagacaatgtaataagaaagttaccaggtcaggaaactccagatggcaatgtgatagg
tgcaatcaggtgtttgaggaatgtgattacagataccttcttcaagctcaaattcaagat
catactgggttgacatgggtgacaactttccaggaatctggggaagagattttgggctgt
cctgcgaaggagctgtacatgatgaagtatgaagaggctgatgataccagattttctgaa
attattagaaactgtctcttcagacaatttatgttcaggcttaaaatcaaagaggaactt
tatggtgatgagcagagggtgaagattacagttgtcaaggcagataaagtgaaccattct
gtagaaagcagacatctccgtgatttaatttcaaaattccgtctatattga
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