Lycium barbarum (goji berry): 132640866
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Entry
132640866 CDS
T09483
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132640866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132640866
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132640866
mRNA degradation factors
5'-3' decay
Decapping complex
132640866
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
PH0730-like_N
Motif
Other DBs
NCBI-GeneID:
132640866
NCBI-ProteinID:
XP_060213649
LinkDB
All DBs
Position
5:complement(58204117..58213549)
Genome browser
AA seq
817 aa
AA seq
DB search
MERSNSRDFKDLTSSSSSISDGALFDASQYAFFGRDITEEVELGGLDGEKDNSDLAIRGD
DEIQEYHLFEKDEGSVLGSLSDIDDLATTFSKLNRNVPGPRHPGVIGDRGSGSFSRESSS
AAEWVKEADFHDWFDQHLSDTECYQESKKWSSQPHISAVHLAESKPLYRTSSYPEQPPQP
QQLQHYLSEPILLPKSSYTSFPPPGGRSQPSPQHSLSRQNMSSLSAGPQSPYSSANLLNS
NMHLTGLAPHGLHYGGGNIPQLNSTSLSLNTRLQNQWTSHAGLIHGDHTGLLDSVLHHQF
PHQNGLLSPQLLSPQQLQQQRLHLSVQPSLAHFSALRSQLFSSFPSPSHLGKYDFRDPRS
KPSHKGRQNVLFSKQGSDTASHKSESNMPQFRSKYMTGDEIESILKMQHSAAHGNDPYVD
DYYHQARLANKAVELRSKHRFCPNKEQSSRSRNSAESQPHLHVDAQGRVSFSSIRRPRPL
LEVDPPGFVGIDGSIEQKISERPLEQEPMLAARITIEDGFYLLTEVDDIDRLLQFSQPQD
GGAQLRRKRQILLEGMAASLQLVDPLGKSGSSSVGLTPKDDIVFLWLLSLPKGRKLISRY
LQLLLPGGELVRIVCMAIFRHLRFLYGGLPPDLEAAETISDLAKIVSKCVSGMDLNSLSA
CLAAVVCSSEQPPLRPLGSPAGDGASIILKSVLERATVLLTDPQAANSFSMPNPALWQAS
FDAFFGLLTKYCLSKYDSIMQSILAQTQPDAAEMISSEVARAVSREMPVELLRASLPHTN
EHQRKLLLNFAERSMPVTGFNAHGGSSGHINPESVSC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctaatagtagagattttaaagacttgactagctcttctagctccatatct
gatggtgccctctttgatgcatcgcagtatgcattttttgggcgagatataacagaggag
gttgaattgggtggtttagatggtgaaaaagacaatagtgatctggctatcagaggtgac
gacgagatacaggagtatcatttatttgagaaagatgagggatcagtcttgggctcttta
tcagacatagatgatctagcaacgacattttcaaagttgaacagaaatgtccctggacca
aggcatcctggcgttattggtgaccgtggatcaggctctttttcaagggaaagttcatct
gcagctgaatgggtgaaagaagcagactttcatgattggtttgatcagcatttatctgac
actgaatgttaccaggaaagcaaaaaatggtcttcacagccacatatctctgcagtacat
cttgcagagtcaaaaccattgtatagaacatcctcataccctgagcaacccccacaaccc
cagcaacttcagcactacttaagtgaacccattttattaccaaaatcatcttacacttct
tttcctcctcctggtggtagatctcaaccctcaccacaacacagcctttcccgacaaaac
atgtcatctctttctgctggacctcagtctccctattcttctgctaatctgttgaactct
aatatgcatttgacaggcttggctcctcatgggctccactatggtggtggaaacatccca
caattgaactctactagtctttctcttaatactaggttgcaaaaccagtggaccagccat
gccggactcatccatggggaccatactggtctcttagatagcgtcttacatcatcaattt
cctcatcaaaacggcttactatccccccagttactgtccccacagcagttgcaacagcag
agacttcatctttcagttcagccttctttagctcatttttcagcactaagatcccaattg
tttagttccttcccttcaccatctcatctaggaaagtatgattttagagatccacgatct
aagccgtcacacaagggtagacaaaatgtgctcttttctaaacaaggctcggatactgct
agccacaaaagtgaaagtaatatgccacagttccgatctaagtatatgactggtgatgaa
atagagagcatcctgaaaatgcagcattctgcagcacatggcaatgatccatatgtagac
gactactatcaccaggcccgccttgcaaataaagcagtggagttgaggtcaaaacatcgg
ttctgtccaaataaggaacagtcttctcggtcgcgtaatagcgcagagtcacagcctcat
cttcatgttgatgctcagggacgggtttcattttcttccatccgtaggcctcgtccactt
cttgaagttgatccaccaggctttgttggcattgatggcagtattgaacagaagatatcc
gagagacccttggaacaggagccaatgcttgcagctagaatcacaatagaagatggtttc
tatcttctcactgaggtagatgacattgacaggctccttcagtttagtcagccccaagac
ggtggtgctcagctcaggcggaagcgacagatcctgctggaaggcatggctgcctcactt
caactagttgacccgcttggcaaaagtggcagttcttctgtcgggcttacccctaaagat
gacattgtatttctatggttgctgtctcttcccaagggccgaaagctcatctcaaggtat
cttcagcttcttctacctggtggcgagcttgtcagaatagtttgtatggcaatttttcgc
catttgaggtttttgtatggtggtcttccacctgacctagaagcagctgagaccatctct
gatcttgcaaaaatagtctctaaatgcgtcagtggcatggacctcaattcactcagtgct
tgtcttgctgctgttgtgtgttcgtcggaacagccacctcttcgccctcttggaagccct
gctggagatggagcctccattattctaaaatctgttcttgaaagggcaactgttctatta
actgatcctcaggctgctaacagcttcagcatgcctaatcctgccctttggcaggcatct
tttgatgctttttttggtttacttacgaagtattgtctgagtaagtatgacagtatcatg
caatcgatactagcgcagactcaaccagacgccgctgaaatgattagttcagaggtcgca
agagccgtaagcagagaaatgccagtggaacttttacgtgctagtcttccacatacaaat
gagcaccaaaggaagctgttgttgaattttgctgagcggtccatgcctgttactggattc
aacgctcatggtggaagcagtggacatataaatcccgaatctgtaagctgttag
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