Lycium barbarum (goji berry): 132640974
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Entry
132640974 CDS
T09483
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03013
Nucleocytoplasmic transport
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132640974
09122 Translation
03013 Nucleocytoplasmic transport
132640974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132640974
03041 Spliceosome [BR:
lbb03041
]
132640974
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
132640974
Spliceosome [BR:
lbb03041
]
Complex C
Other components
EJC/TREX
132640974
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132640974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
FlxA
Motif
Other DBs
NCBI-GeneID:
132640974
NCBI-ProteinID:
XP_060213784
LinkDB
All DBs
Position
5:77978207..78040177
Genome browser
AA seq
1862 aa
AA seq
DB search
MSLSPLEYLYLTEESIKELKNGNTSFKFSQPVPTLRFLYELCWVMVRGELPFQKCKVALE
SVEFVDYASQEELGSSLADIVTQLAQDMSLPGENRQRVNKLAKWLVESALVPLRFFQERC
EEEFLWESEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQNPEDS
TQNASAATVGIIKSLIGHFDLDPNRVFDIVLECFERQPGNSIFLDLIPIFPKSHASQILG
FKFQYYQRLEVNDPVPSELYQLTALLVKRDFIDVDSIYAHLLPKEEDAFDHYNAFSAKRL
DEANKIGKINLAATGKDLMDEEKQGDVTVDLYAALDMETEAVAERSTELENSQPLGMLMG
FLEVDDWYHAHVLFDRLSHLNPAEHVQICDGLFKLIERSISEPNDLVCKMQLLGSLPGVV
TDYSMEVANSSSSRSYISLRKELFEMLSSVGPHLYRDTLLLQKVCRVLRGYYICAHELVT
SGEAGFISQTVTIGDRTPRMHLKDARSRIEEALGGCLLPSLQLIPANPAVGLEIWELMNL
LPYEVRYRLYGEWEKDDEQFPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQSGREKLKDDGLNL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGNGIELVFMQELIQQMANVHYTEN
MTEEQLDAMAGSDTLRYQATSFGITRNNKALIKSTNRLRDALLPKDEPKLAIPLLLLIAQ
HRSVVVINAEVPYIKMVSEQFDRCHGALLQYVEFLSSAVTPTAAYAVLIPTLDELVHVYH
LDPEVAFLIYRPVMRLFRCQRNSDVFWPSDSDEAVSLANAEKESESSDSSAYLLLDLGSS
RKPISWTDLLDTIRTMLPSKAWNSLSADLYATFWGLTLYDLHVPRSRYESEIAKQHAALK
ALEELSDNSSSAITKRKKDKERIQESLDRLTMELQRHEEHVTSVRRRLTREKDTWLSSCP
DTLKINMEFLQRCIFPRCTFSMPDAVYCAVFVNTLHSLGTPFFNTVNHIDVLICKTLQPM
ICCCTEYEVGRLGRFLYETLKTAYYWKGDESIYERECGNMPGFAVYYRYPNSQRVTYGQF
IKVHWKWSQRITRLLIQCLESTEYMEIRNALILLTKISSVFPVTRKSGINLEKRVAKIKS
DEREDLKVLATGVAAALASRKPSWVTDEEFGMGYLELKLAAVPASKSSTVNSVAIPNGSG
PSVPQAEPSVGRTVAAGRVADGKLDRPESSMPKPDLGQVKQKGSQSINGLDGQSMPSAAL
QSDTPIQKHIDESTCRPLEENTLKAASKISGEQEGRATGKRATPAGSLSKQQKHDTASDD
KSGKAVGRASGAASVDVGYPSESRASGNVNASAVVSGNGSMFSTVPKGAASSTRSLELSS
ESKAELSATKSADLRVSAGKDDVNESSDVQKESTSRLVHSPRQDASRANEKVQKRSIPAE
ELDRLNKRRKGEIDSRDNDCGDARSSEREWLIDARATDKLHPTDYDKHGSDDHMNRASEK
PLDRSKDKGGERHERDHRERADRPDRSRGDEAFEKSRDRSTERHGRERSIERVQERVADR
NFDRLSKDERIKDDRSKLRHSEVSVEKSHTDDRVFNQNLPPPPPLPPHMVPQSINAGRRD
DDSDRRFGTARHSQRLSPRHDERERRRSEENNALLQDDLKRRREEDFRDRKREERELPMK
VEERERDREKASIIKEDVDPNASKRRKLKREHMASEPGEFSPSAHPPALSINMSQPSDGR
DRGERKGVMVQQRPGYLDEPGLRNHGKESASKAPRRDADSMYDREWDDDKRQRAEPKRRH
RK
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atgtctctttcacctttggagtatttgtaccttacagaggagtccatcaaagagttgaaa
aatggaaacactagcttcaaattctctcaacctgttcccactcttcgctttctctatgag
ctctgctgggttatggttcggggcgaattgccgtttcagaaatgtaaagtggcattagag
tctgtggagtttgtggattatgcttcccaggaggagctagggtcgagtttggctgatatt
gttacccaattggctcaggatatgtcgttgccgggagaaaatcgtcaacgtgttaacaag
ctggcaaaatggcttgtggaatctgctttggttcctttgagattttttcaggagcgatgt
gaggaagagtttttgtgggaatctgagatgatcaagataaaggctgcagatttgaagtcg
aaagaggttagggtaaacactcgtcttctttatcagcaaacgaagtttaaccttcttcgg
gaagagagtgaaggttacgcgaagctggtcactctcctttgtcaaaatccagaggattct
acacaaaatgcttcagctgctacagttggcataatcaagtcgttgattgggcactttgat
ctggatcctaaccgagtctttgatattgttttggagtgttttgaacgtcagcctggtaat
agtatatttttggacctgattcccatatttcccaagtcccatgcctcccagattttgggg
tttaagttccaatactaccaaaggctggaagtaaatgatcctgttccaagtgaactttac
cagctgacagccctgctggtgaaaagagacttcattgatgttgacagcatttatgcacat
ttacttcccaaggaggaggatgcttttgaccattacaatgcattttcagctaagaggctt
gatgaggctaacaaaataggtaaaataaatcttgctgctactgggaaggatctcatggat
gaagaaaagcaaggagatgtgacagtggatctgtatgctgcactggatatggaaacagag
gcagttgctgagcgttccacggagctagaaaatagtcaacccctgggcatgcttatggga
tttcttgaagtggatgactggtatcatgctcatgtgttgtttgaccgtctctcacatctt
aatccagcagagcatgtacaaatatgtgatggattattcaagctcattgaaagatcaata
tctgaaccgaatgaccttgtttgcaagatgcaacttttgggttcacttcctggagttgtc
actgactactcgatggaagtggcaaactcatcaagcagtagatcttatatcagtcttcga
aaagagctttttgagatgctctcttctgtgggacctcatctttatcgagatacgttgttg
ctacagaaggtatgcagagttttgagaggttactacatttgtgcacatgagcttgtcact
agtggtgaggcaggctttatctcccaaactgttaccattggtgatcgaactcctcgtatg
cacctgaaggatgctaggtcacgaattgaagaagcattaggaggatgcctgcttccttcc
ttacagttgataccagcaaatcctgcagttgggctagagatctgggaactaatgaatctc
cttccatatgaggtgcgttatcgtttgtatggtgaatgggagaaagatgatgagcaattt
ccaatgcttttggctgcaaggcaaacagcaaagttggacactaggaggatcctgaagcgc
cttgcaaaagaaaatctaaagcagcttggtcggatggttgccaaacttgctcatgccaat
ccaatgacagtattgcgaacaattgttcaccagattgaggcttacagggatatgattaca
cctgttgtagacgcttttaaatatctgactcagcttgagtatgatatcttggagtatgta
gttattgaacggttggcacaaagtgggagagagaagctgaaagatgacggccttaatttg
tctgattggcttcagtctttggcatcattttggggtcacctgtgcaaaaaatacccgtca
atggaattgaggggcctttttcagtatcttgttaatcagttgaagaaaggaaatggtatt
gagcttgttttcatgcaggagctcattcagcaaatggctaatgtacactatacagagaat
atgacagaggaacaattggatgccatggctggaagtgacactctacgctaccaggccacc
tcatttggcataacgcggaacaataaggcattgattaaatcgactaacaggctgcgagat
gctttgctcccaaaagatgaaccaaagttggcaattccacttttgctactcattgctcaa
catcgttctgtggtagttataaatgcggaagttccatatattaaaatggtcagtgaacag
tttgataggtgtcatggagcccttcttcagtatgtggaatttttgtccagtgcggtgact
ccaacggctgcctatgctgttcttattccaactctggatgaacttgtacatgtgtatcat
cttgatcctgaggtagcatttttgatttatcggcctgttatgaggctcttcaggtgtcag
agaaattcagatgtcttttggccttcagatagtgatgaagcagtgagcttagccaacgct
gaaaaggagtctgaaagctcagactcatctgcttacttactccttgatcttggttcttct
cggaaacctatctcatggacagatcttcttgataccatcagaacaatgttgccttcaaaa
gcctggaatagcttgtccgcagacttgtatgccaccttttggggtctcacactatatgat
cttcatgttcctagatcccgttacgagtctgaaattgcgaagcagcatgctgctcttaaa
gctctggaagaactttctgataattcaagttctgcaatcacaaaaaggaagaaagacaaa
gaaagaattcaagagtctctagatcggttgactatggagcttcagagacatgaagagcat
gttacgtctgttcgtagacgcctgactcgtgaaaaggatacatggctgagttcctgtcct
gatactttaaagatcaacatggaattccttcagcggtgtatatttccacgctgtacgttc
agtatgccagacgctgtgtattgcgccgtgtttgttaatactcttcattcccttggaacg
cccttctttaacactgtgaaccacatagacgttttgatatgtaagacgttacaacccatg
atctgttgttgcaccgagtatgaagtaggtcgactaggaagatttttatacgagacattg
aagactgcttattattggaagggtgatgaatcaatttatgaacgcgagtgtggaaacatg
cctggatttgccgtctattacagatatccaaacagccagcgtgttacatatggccaattt
attaaggtacactggaagtggagtcaaagaataacgaggttgctcatacagtgtctggaa
tcaactgagtacatggaaatcagaaatgctcttattttattgacaaagatctccagtgtc
tttccagttactcggaagagtggaataaaccttgagaagagggttgccaaaattaaatct
gatgaaagagaggatctcaaagtattggctacaggggttgctgcagctttggcatccaga
aagccatcatgggtgacagatgaagagtttggaatgggttacctagaactaaaacttgca
gcagtacctgcttctaagtcttcgactgttaattcagtggcaataccaaatgggagtggc
cctagtgttcctcaagctgagccttctgttgggagaactgtggcggctggaagagtagct
gatggcaagttggataggccagagagttctatgccaaaacctgatttaggtcaggtaaaa
cagaaaggtagtcaatcaattaatggactggatgggcaatctatgccatctgctgccctg
cagtctgatactccaattcaaaaacatatagatgaatctacttgtagaccattggaagag
aataccctaaaagctgcttccaagatatctggcgagcaggagggaagagctacaggcaag
cgagctactcctgctggatctctctcaaagcaacaaaagcatgacactgcaagtgatgac
aagtctgggaaagctgttggaagagcatctggagctgcttctgttgatgttggttatcct
tcggagagcagagcaagtgggaatgtcaatgcttctgctgtagtttcagggaatggtagc
atgttttctactgtacctaaaggtgcagcttcatcaacgagatcgttagagctttcaagt
gaatctaaagctgaactttcggctactaaatctgctgatctgcgggtttccgctggaaaa
gatgatgtcaatgaaagttctgatgtgcagaaggagtccacatcgcgtctggtccattcg
cctcggcaggatgcttctagagctaacgaaaaagtacagaagagatctatccccgcagaa
gagcttgatagactcaataaacgccggaaaggtgaaattgacagtagagataatgattgt
ggtgatgctcgttcatctgagagagagtggttaatagatgcaagagctacagataaactt
catccaacagattatgataaacatggatctgatgatcatatgaaccgggcctcggaaaag
cctcttgatagatcaaaagataagggtggtgaaagacatgagagagaccacagagaacga
gcggaccgtcctgacaggtctcgtggggatgaggcatttgaaaaatcaagagataggtca
acagagcggcatggaagagaacgctcaattgaaagggtacaggagagagttgctgatagg
aactttgataggttaagtaaggatgaaagaatcaaagatgataggagcaagctgcgacat
agtgaagtgtctgtagagaaatctcatacagatgatcgggttttcaatcaaaatttgcct
ccacctccaccactgcctcctcacatggttccacaatccattaatgcaggcaggagagat
gacgattctgatagacgttttggtactgccaggcatagccaaagactttctccacgacac
gatgagagagagagacgacgatcagaagagaataatgcattattgcaggatgatttgaag
cgaaggagggaagaagattttcgagatagaaagcgggaagagagagaactcccaatgaag
gtagaagagagggaaagagatagggagaaagcaagcatcataaaagaggatgtggatcca
aatgcctcaaagaggcgcaaacttaagagagagcatatggcttcagaacctggagagttt
tcaccctctgctcatcctcccgccctttctattaatatgtcgcagccctctgatggaaga
gataggggagagcgaaagggtgttatggttcagcagcgtccaggttacttggacgagcca
ggtcttaggaatcatggaaaagaaagtgccagcaaagcaccccgtcgtgatgcggactct
atgtatgacagagagtgggatgacgacaagaggcaaagagctgagcccaaaaggcggcat
cggaagtaa
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integrated database retrieval system
