Lycium barbarum (goji berry): 132641250
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Entry
132641250 CDS
T09483
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03440
Homologous recombination
lbb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132641250
03460 Fanconi anemia pathway
132641250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbb03032
]
132641250
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132641250
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
132641250
DNA replication proteins [BR:
lbb03032
]
Eukaryotic type
DNA Topoisomerases
132641250
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
132641250
FA (Fanconi anemia) pathway
132641250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
zf-CCHC
zf-CCHC_2
Zn_ribbon_GRF_2
Toprim_4
Motif
Other DBs
NCBI-GeneID:
132641250
NCBI-ProteinID:
XP_060214147
LinkDB
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Position
5:complement(118537145..118606339)
Genome browser
AA seq
916 aa
AA seq
DB search
MAGGGRAIRVLNVAEKPSVAKAVSGILSKNQPGGMRVRDGRSRYNKIFEFNYTIWNQPCH
MLFTSVTGHLMELEFDERYRKWHSCDPLELYTAPVRKHVPEDKLDIKRTLEAEARSCQWI
ILWLDCDREGENIAFEVLEVCRQANHNLNVWRAHFSALIDREIHQSMRTLVQPNQLKSDA
VDVRQEIDLRIGASFTRFQTMLLGSAYVLDFATDDRNLVLSYGPCQFPTLGFVVERYWEI
QAHEPEEFWTINCTHNSDEGTATFDWMRGHLFDYTSAVTIYEMCIQEPTATVSKVKPQEK
LKYPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDRFSEKTDLRTM
VQEQEGHPVWGSYAQRLLDPQSGLWRNPSGGGHDDKAHPPIHPTKFSAGESRWSQDHHRV
YELVVRHFLACVSQPAVGAETIVEIDIAGEFFSVRGRVILAKNYLDVYRFESWGGSVIPT
YNFGQQFTPTTLTLDSGVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRYYAIK
DSNTRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMNAVSIGTKRKAEVLETCLQQM
KACFLDARANKGKLFEAMSIFFERSNRSTGGQQQAVSDVVRRCGLCQESDMVLRQKPDGN
FMVGCLGYPQCRNAVWLPGPVSEASVTENICTSCSPGPVFKIQFKFRRLEIPPNYSVQHL
GCIGGCDDILRQLVEICGTGSRNAANTSGRGRGNPSASSSAQRSNSRAQSSCAYCRQTGH
LSSDCPSQASRGRAARSQEVDLQNGEPSIPCNSCGAPCILRTANTANNRGRKFFSCQSQE
CNFFVWEDNLNGGRVERGNTSASTGSGRGGRGRGRGRGGAHPSSGSFVSATGEPITGRCF
VCGDPGHFANVCPRRG
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcggcggccgagcaataagggtactaaatgtggcggaaaagccatcagtagca
aaagcagtatcagggatactatcaaagaatcaaccaggtggtatgagagtaagagatgga
cgttcaaggtacaataaaatctttgagtttaattacactatttggaatcaaccttgtcac
atgttgtttacttctgttacgggtcaccttatggaacttgagtttgatgaacgttaccgg
aaatggcattcctgtgacccccttgagctttacactgcacctgttcggaaacatgttcct
gaggataagttggatattaaaaggacactggaggcagaagccagaagttgtcagtggatt
atattgtggctcgattgtgatagagaaggagaaaatattgcatttgaagtgttggaagta
tgtagacaagcgaatcataaccttaatgtttggagagctcatttctctgccttaattgac
agggaaattcaccaatcaatgcggacccttgttcagccaaatcagttaaaatctgatgct
gtagatgttcggcaagagatagatcttcgtattggagcgtctttcacaagatttcaaaca
atgcttctgggaagtgcatatgtccttgattttgcaacagatgatagaaatcttgtctta
agctatggtccctgccagttccctacacttggctttgttgtggagcggtattgggaaata
caagcacatgaacctgaagagttttggacaatcaactgtactcacaactcggatgaaggc
actgctacctttgattggatgcgcggtcatctgtttgattacacatctgcagtaacaatt
tatgagatgtgcatccaggaacccactgcaacagttagcaaagttaaaccgcaggagaaa
ctcaaatacccccctcatcctttaagtacaattgagcttgaaaagcgtgcatccagatac
ttccgtatgagttccgagcagacaatgaaggtggcagaagatttatatcaaaatggtttt
atcagttatcctcgcacagaaactgatcgcttctcggagaagacggacttgcggacaatg
gtgcaagagcaagaaggtcatcctgtatggggctcatatgcgcagcgcctactagaccct
caatcaggactttggagaaaccctagtggaggtgggcatgatgacaaagcccatcctcct
attcatccaactaaattttctgctggggaatccagatggagccaggatcaccatagagtg
tacgagttggttgttcgccattttttggcctgtgtttctcaacctgctgttggggctgaa
actatagttgagattgacattgctggtgaattcttttctgtacgtgggagagtgatactt
gcaaaaaactaccttgatgtgtaccgatttgaatcatggggaggttcagtgatcccaaca
tacaattttggtcaacagtttacaccaacaacattgacccttgattcaggagttacaaga
cctcctccccttttaagtgaggctgatctattgggttgtatggacaaggctggcattgga
acagatgcaacaatgcacgatcacataaagaaactacttgatcgatattatgcaattaag
gactcgaacactcggttctcgccaactaaacttggggaagcgctagtgatgggatatgat
gatatgggttatgaactatggaaaccatatctccgtgctatgatggaatgtgatatgaat
gccgttagcataggaaccaagagaaaggctgaggttctagaaacttgcttgcagcagatg
aaagcttgctttttagatgccagggcaaacaaaggaaagctctttgaagccatgtctatc
ttctttgaaagatcaaacagatccactggtggccagcaacaagcagttagcgatgttgtt
cggagatgtggactttgtcaagagtcagatatggtgctcagacaaaaaccggatgggaac
ttcatggttggttgcttgggttacccacaatgcagaaatgctgtctggctacctggacct
gtatcagaagcttctgttaccgagaatatttgcactagctgcagtccaggaccggttttc
aagattcagtttaaatttcgccggctggaaataccgccaaattacagtgtgcaacattta
ggttgcattggtggctgtgatgatattcttaggcagcttgtggagatttgcggaactggt
tctcgcaatgctgccaacacttcgggcagaggacgaggaaatccttcagcatccagcagt
gcacaaagaagcaattccagagcacaaagttcttgtgcgtactgcaggcaaacagggcat
ttgtccagtgattgtccttcacaggcttctcgtggtcgcgctgctcggtctcaggaagtt
gacttgcaaaatggagaaccttcaatcccttgtaattcatgtggagcaccttgcattttg
cgcactgccaatactgccaacaacaggggaagaaagttcttttcatgtcaatcacaggag
tgcaacttttttgtatgggaagataacctcaatggaggaagagtagagcgtggaaatact
tctgcatctactggcagcggaagaggtggccgtggtcgtggccggggacggggtggtgcg
catcccagtagtgggtcatttgtgtcggcaacaggtgaaccaataactggcagatgtttc
gtctgcggtgatccaggtcattttgctaatgtttgtccacgtcgtggttga
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