KEGG   Lycium barbarum (goji berry): 132641487
Entry
132641487         CDS       T09483                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03030  DNA replication
lbb03410  Base excision repair
lbb03420  Nucleotide excision repair
lbb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132641487
   03410 Base excision repair
    132641487
   03420 Nucleotide excision repair
    132641487
   03430 Mismatch repair
    132641487
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lbb03032]
    132641487
   03036 Chromosome and associated proteins [BR:lbb03036]
    132641487
   03400 DNA repair and recombination proteins [BR:lbb03400]
    132641487
DNA replication proteins [BR:lbb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    132641487
  DNA Replication Termination Factors
   ELG1-RFC complex
    132641487
Chromosome and associated proteins [BR:lbb03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    132641487
DNA repair and recombination proteins [BR:lbb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     132641487
  Check point factors
   HRAD17(Rad24)-RFC complex
    132641487
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_lid_RFC1 AAA_16 AAA_5 AAA_22 AAA_11 AAA_assoc_2 AAA_14 DUF815 ATPase_2 AAA_24 RuvB_N AAA_30 nSTAND_NTPase5 AAA_7 DNAX_ATPase_lid ResIII AAA_3 AAA_19 nSTAND3 bpMoxR AAA_28 AAA_18 AAA_2 TniB SLFN-g3_helicase RNA_helicase ABC_tran AAA_25 Mg_chelatase nSTAND6 DO-GTPase1
Other DBs
NCBI-GeneID: 132641487
NCBI-ProteinID: XP_060214487
LinkDB
Position
1:complement(143843996..143849237)
AA seq 363 aa
MLGFKEERNLKMAETMEMDDKPSKGKNTVFSTSNNEPKSVPWVEKFRPQSLDDVAAHRDI
VETIDRLASSNRLPHLLLYGPPGTGKTSTILALARKLYGTQMNNMVLELNASDDRGIDVV
RQQIQDFASTQSISFGAKSAVKLILLDEADAMTKDAQFALRRVIEKYTRNTRFALICNNV
NKVIPALQSRCTRFRFAPLDAVHVSERLKHVIEAERLDVPEGGLKALVQLSNGDMRKALN
ILQSTHMASQLITEEAVYLCTGNPLPKDIEQISYWLLNEPFAISCKRISDIKTIKGLALV
DIVREVTMFVFKIKMPADVRVQLINEMADIEYRLTFGCNDKLQLGSLIAAFTRARAALVA
AAK
NT seq 1092 nt   +upstreamnt  +downstreamnt
atgctagggtttaaggaagagagaaacctgaaaatggcggaaacaatggagatggacgat
aaaccaagcaagggtaaaaacacagtcttttcaacatccaataatgaacccaaatctgtt
ccttgggtcgaaaaatttcgtcctcaatccctcgatgacgtggctgctcatcgtgatatt
gttgaaaccattgataggcttgcgagtagtaataggttgccgcatttgctgctttatgga
ccgcctggaactggaaagacatctacaattcttgctcttgctcggaagctatatgggact
cagatgaacaatatggttttagagctgaatgcgtctgatgatcgcgggattgatgtggtg
cgacagcagattcaggactttgctagtactcagagcatctcatttggtgcaaagtcagca
gtgaagttaatattattggatgaagcagatgcgatgacaaaagatgcacagtttgctctg
cgtcgagtgattgagaaatatacaagaaacactaggtttgccttgatatgtaacaatgtc
aacaaggttattcctgccctacaatcacgatgtacacgatttaggtttgctccactcgat
gcagttcatgtctctgagcggctcaaacatgttatcgaggctgaacggcttgatgtcccc
gagggtggtttaaaggcacttgtacaattgagcaacggcgacatgcgaaaagctttaaac
attttgcagtcaacacacatggcttctcagctgattacggaagaagctgtctatctgtgc
actggaaatccattgccgaaggacattgagcagatctcttactggcttctgaatgaaccc
tttgctatcagttgcaaacgaatatcagacatcaagacaataaaagggttagctctggtg
gatatcgtgagagaagtaaccatgtttgtcttcaagattaagatgccagcagatgttcga
gttcagctgatcaatgagatggctgatattgagtataggttaacttttggttgcaatgac
aagttgcagcttggatcactgattgctgcttttacacgagcaagagccgcacttgttgca
gctgcaaagtaa

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