Lycium barbarum (goji berry): 132641521
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Entry
132641521 CDS
T09483
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132641521
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
132641521
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
132641521
NCBI-ProteinID:
XP_060214534
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Position
5:128489663..128492405
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AA seq
459 aa
AA seq
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MMASISNFNSVIFLFSLLCFASLIPYLHANIADFDPYLEKRAEEALKSSLAAYNENPEDV
TYSFNKEVGETIINGTRRHLKEEDKDDKDDKAEKDNKDDKDDNDGCKAYNPIDKCWRCDK
NWANNRKALADCAKGFGHGTTGGKDGRFYVVTDSSDDNVEDPKPGTLRHAVIQEEPLWII
FEKSMIIRLKQELMINNDKTIDGRGVSVHVAYGAGLTIQFVHNVIVHNIRVHHIESTSGG
MIRDSIDHIGLRTVSDGDAISIFGSNRIWIDHCTLTKGADGLVDAIMASTAITISNCKFN
HHNDVMLLGANDAFPQDKIMQVTVAFNRFGKGCIQRMPRCRWGFFHVVNNDYAKWEMYAI
GGTANPTIISQGNRFKADNNPNTKEVTNRNGAPESLWRNWQWRSEGDLFLNGAFFRESGP
DIKRTPFTEHTSIKFEPAKFVGRLTRKAGVIKCKIGKAC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgatggcctctattagtaattttaattcagttatttttctgttttcccttttatgtttt
gcttctttaatcccatatttgcatgccaacattgctgattttgacccttatttggaaaaa
agagctgaagaagcccttaagtcttctcttgctgcttataatgaaaatcctgaggatgtc
acttattctttcaacaaagaagttggagaaacaattatcaatggcacaaggaggcatctg
aaggaagaagataaagatgataaagatgataaggctgaaaaggataataaggatgataag
gatgataatgatggttgcaaggcatacaatccaattgacaaatgctggagatgtgacaaa
aactgggctaataacaggaaggcactagcagattgtgctaaaggatttggccatggcaca
actggtggtaaagacggtagattctatgttgtcaccgattcctctgatgacaatgtggag
gatcctaagccagggaccctccgtcacgctgtcatccaagaggagccattgtggatcatc
ttcgagaagtccatgattatcaggttgaaacaagaactgatgatcaacaatgataagact
attgatggcaggggagtttctgttcatgttgcatatggagcaggactaaccatacaattt
gtgcacaatgtgattgtccacaacattagggttcatcacattgaatctacctctggtggt
atgatcagagattctattgaccatattggtcttaggacagtgagtgatggtgatgctatt
tccattttcggttccaaccgtatctggatcgatcattgtactttaaccaagggtgctgat
ggcctcgtcgatgcaatcatggcctccacagctatcaccatttctaactgcaaattcaac
catcataacgatgtgatgcttttgggagcgaacgatgcctttcctcaagataaaatcatg
caagttacagttgcattcaatcggtttggaaagggatgtatccagaggatgccaaggtgc
aggtggggattcttccatgttgtcaacaacgactacgctaagtgggaaatgtatgcaatt
ggtggcacagctaatcccaccattattagccagggtaaccgcttcaaggctgacaacaac
ccaaacactaaagaggtgacaaaccgcaatggtgccccagaatctctatggagaaactgg
caatggagatccgagggggacttgttcttgaacggagccttctttagggagtctggacca
gatatcaagcgcactccatttacagaacacaccagcatcaagtttgagcctgctaaattt
gttggcagactcactcgcaaagctggtgtaatcaagtgcaagattggaaaagcatgctag
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